View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8145_low_1 (Length: 344)
Name: NF8145_low_1
Description: NF8145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8145_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 6315210 - 6315516
Alignment:
| Q |
17 |
aagaaatataagaaaggagaagaaaaatagagatgaagggtggtttaaatggagaaatggtaatgcatgaaagttaagggaggggcgttacaaattatat |
116 |
Q |
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| T |
6315210 |
aagaaatataagaaaggagaagaaaaatagagatgaagggtggtttaaatggagaaatggtaatgcatgaaagttaagggaggggcgttacaaattatat |
6315309 |
T |
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| Q |
117 |
agatgacccatctggctctcattgtcaccttggcatacacatttatagtatcgagctaagatnnnnnnnnnnnnnnnaggatatttatgtggaaatgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6315310 |
agatgacccatctggctctcattgtcaccttggcatacacatttatagtatcgagctaagataaagagagagagagaaggatatttatgtggaaatgaat |
6315409 |
T |
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| Q |
217 |
ttttcttccttgtgaagaaaaatatatttttctttacattcacattggttgaattggttttgtaccactttttgaaaaatcgatatttatattagtattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315410 |
ttttcttccttgtgaagaaaaatatatttttctttacattcacattggttgaattggttttgtaccactttttgaaaaatcgatatttatattagtattt |
6315509 |
T |
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| Q |
317 |
tacttta |
323 |
Q |
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||||||| |
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| T |
6315510 |
tacttta |
6315516 |
T |
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