View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8145_low_4 (Length: 231)
Name: NF8145_low_4
Description: NF8145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8145_low_4 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1414495 - 1414265
Alignment:
| Q |
1 |
agctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414495 |
agctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcacca |
1414396 |
T |
|
| Q |
101 |
aagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414395 |
aagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctca |
1414296 |
T |
|
| Q |
201 |
tgaaattcatgaggctaattcatagaaattt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1414295 |
tgaaattcatgaggctaattcatagaaattt |
1414265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1420041 - 1419822
Alignment:
| Q |
1 |
agctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcacca |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||||||| || | | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1420041 |
agctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctgaatttgagtcacca |
1419945 |
T |
|
| Q |
101 |
aagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1419944 |
aagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaagtacatgaattaacctca |
1419845 |
T |
|
| Q |
201 |
tgaaattcatgaggctaattcat |
223 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1419844 |
tagaattcatgaggctaattcat |
1419822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 1411119 - 1410990
Alignment:
| Q |
1 |
agctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||| ||||| |||||||| |||||| |
|
|
| T |
1411119 |
agctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtatccgaatttgaatcacca |
1411020 |
T |
|
| Q |
101 |
aagttataaattgcagggtacacacatttg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1411019 |
aagttataaattgcagggtacacacatttg |
1410990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 1410965 - 1410884
Alignment:
| Q |
131 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcatga |
212 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||| || |||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
1410965 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagtatatgaattagcctcatagaattcatga |
1410884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1408237 - 1408109
Alignment:
| Q |
1 |
agctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcacca |
100 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||| |||| ||| ||| |||||| | | ||||||||||||||||||||||||| |
|
|
| T |
1408237 |
agctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttgagtcacca |
1408138 |
T |
|
| Q |
101 |
aagttataaattgcagggtacacacattt |
129 |
Q |
| |
|
|| || ||||||||||||||| ||||||| |
|
|
| T |
1408137 |
aaattgtaaattgcagggtactcacattt |
1408109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 1408080 - 1408010
Alignment:
| Q |
140 |
acttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcat |
210 |
Q |
| |
|
|||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1408080 |
acttgaatgaatgtaaatgtcacacacagattgaaaaaccaaagtacatgaattaatctcatagaattcat |
1408010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
4 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
103 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| | | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
|
| Q |
104 |
ttataaattgcagggtacacacattt |
129 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
4 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
103 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
|
| Q |
104 |
ttataaattgcagggtacacacattt |
129 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University