View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_high_10 (Length: 243)
Name: NF8146_high_10
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 2737654 - 2737880
Alignment:
| Q |
17 |
attattactcacccaccatacctacaatttagccaaatataagaaaaattcaaaacaaaaccataattatcacatgtataattaaggttgtcggcacaca |
116 |
Q |
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| T |
2737654 |
attattactcacccaccatacctataatttagccaaatataagaaaaattcaaaacaaaaccataattgtcacatgtataattaaggttgtcggcacaca |
2737753 |
T |
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| Q |
117 |
aattttacctaaacataaacaacacaacgtggttttaacacaaaaatcgcaaacacgttcatcccacggtttcttcggatttttcccaacaataacacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2737754 |
aattttacctaaacataaacaacacaacgtggttttaacacaaaaatcgcaaacacgttcatcccacggtttcttcggatttttcccaacaataacacat |
2737853 |
T |
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| Q |
217 |
taacatcctcgactcctttttctcctt |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2737854 |
taacatcctcgactcctttttctcctt |
2737880 |
T |
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