View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_high_11 (Length: 240)
Name: NF8146_high_11
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 11125482 - 11125259
Alignment:
| Q |
17 |
atcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccgaaaagatagaacga |
116 |
Q |
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| T |
11125482 |
atcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccggaaagatagaacga |
11125383 |
T |
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| Q |
117 |
aagtggaaagatggagagatgctttaagagaagttgctggttactctggttgggactccaagggccggttagttgtctcatcattcagtttttctattta |
216 |
Q |
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| T |
11125382 |
aagtggaaagatggagagatgctttaagagaagttgctggttactctggttgggactccaagggccggttagttgtctcatcattcagtttttctattta |
11125283 |
T |
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| Q |
217 |
tgttgattcaattgatagaacatt |
240 |
Q |
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| T |
11125282 |
tgttgattcaattgatagaacatt |
11125259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 29571214 - 29571378
Alignment:
| Q |
18 |
tcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccgaaaagatagaacgaa |
117 |
Q |
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| T |
29571214 |
tcttctatggtgtggatccatctgatgtaaggcatcaaagaggatgctttgaggaagctttcagaaaacatcaagagaaattcggtcaacacagtgacag |
29571313 |
T |
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| Q |
118 |
agtggaaagatggagagatgctttaagagaagttgctggttactctggttgggactccaagggcc |
182 |
Q |
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| T |
29571314 |
ggttgatagatggagagatgctttcacacaagttgccagttactctggatgggactccaagggcc |
29571378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 29821115 - 29821045
Alignment:
| Q |
18 |
tcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacat |
88 |
Q |
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| T |
29821115 |
tcttctatggtgtggatccgtctgatgtaaggcatcaaagaggaagctttgaggaagccttcagaaaacat |
29821045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 29829784 - 29829714
Alignment:
| Q |
18 |
tcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacat |
88 |
Q |
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| T |
29829784 |
tcttctatggtgtggatccatctgatgtaagacatcaaagaggatgctttgaggaatctttcagaaaacat |
29829714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 29829677 - 29829620
Alignment:
| Q |
125 |
agatggagagatgctttaagagaagttgctggttactctggttgggactccaagggcc |
182 |
Q |
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| T |
29829677 |
agatggagagatgctttcacacaagttgccagttactctggatgggattccaagggcc |
29829620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 36399539 - 36399460
Alignment:
| Q |
17 |
atcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaa |
96 |
Q |
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| T |
36399539 |
atcttctacggtgtagatccctctgatgtaaggaatcaaaggggaagttttgctgaggcttttaagaaacatgaagaaaa |
36399460 |
T |
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