View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_high_2 (Length: 449)
Name: NF8146_high_2
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 5432725 - 5433161
Alignment:
| Q |
1 |
aagggatcatgctgtttccttggtcgtttggaatgatctcaacatgctgtttcctatgactttgctttttgtagttgccatggcaattgatatttggaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5432725 |
aagggatcatgctgtttccttggtcgtttggaatgatctcaacaggctgtttcctatgactttgctttttgtagttgccatggcaattgatatttggaac |
5432824 |
T |
|
| Q |
101 |
ctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatcctagtcttagcatgttctccttcatacacttatcaaaacacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5432825 |
ctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatcctagtcttagcatgttctccttcatacacttatcaaaacacta |
5432924 |
T |
|
| Q |
201 |
tcttgattatcagagactgtagcgaaaacactttatttttt-gtcgggatcaatgtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaa |
299 |
Q |
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| T |
5432925 |
ttttgattatcagagactgtagcgaaaacacttttttttttggtcgggatcaatgtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaa |
5433024 |
T |
|
| Q |
300 |
caccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatattgctgcttgaaccgaggcatcatacac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5433025 |
caccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatatcgctgcttgaaccgaggcatcatacac |
5433124 |
T |
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| Q |
400 |
cacaacttcataagaattaatgcttttgcatggctct |
436 |
Q |
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| T |
5433125 |
cacaacttcataaggattaatgcttttgcatggctct |
5433161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 436
Target Start/End: Complemental strand, 5446574 - 5446220
Alignment:
| Q |
86 |
attgatatttggaacctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatcct-agtcttagcatgttctccttcatac |
184 |
Q |
| |
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||||||||||||||||||||| ||| || |||| ||| ||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5446574 |
attgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtcttagcatgttctccttcatac |
5446475 |
T |
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| Q |
185 |
actt--atcaaaacactatcttgattatcagagactgtagcgaaaacactttatttttt-gtcgggatcaatgtgttctttcgaatcaaaacaaacatga |
281 |
Q |
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|||| ||||||| |||||||||||||||| || || ||| ||| ||| ||| ||||| || ||||||| || |||||| ||||||||||| |||||| |
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| T |
5446474 |
actttgatcaaaagactatcttgattatcacaggctatagagaatacattttcctttttcgtagggatcatagtattctttggaatcaaaacagacatga |
5446375 |
T |
|
| Q |
282 |
caccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatattgctgcttg |
381 |
Q |
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||||||| | |||||||||||||||||| ||| |||||||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
5446374 |
caccacctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaatattgctgcttg |
5446275 |
T |
|
| Q |
382 |
aaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctct |
436 |
Q |
| |
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||| | ||| |||| ||||| |||||| || ||||||||||||||| |||||| |
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|
| T |
5446274 |
aacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctct |
5446220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 5432258 - 5432329
Alignment:
| Q |
86 |
attgatatttggaacctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatc |
157 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| |||| |||| |||||||| ||||||||||||||||| |
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| T |
5432258 |
attgatatttggaacctttctaggtgttgaagagaatccatagagctcaaatttaccaagcaaaaagttatc |
5432329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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