View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_high_5 (Length: 305)
Name: NF8146_high_5
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 13855191 - 13855461
Alignment:
| Q |
22 |
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga |
121 |
Q |
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| T |
13855191 |
gaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgcttgaga |
13855290 |
T |
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| Q |
122 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
221 |
Q |
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| T |
13855291 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
13855390 |
T |
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| Q |
222 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtct |
292 |
Q |
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| T |
13855391 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtct |
13855461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 13849401 - 13849669
Alignment:
| Q |
22 |
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga |
121 |
Q |
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| T |
13849401 |
gaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgttagaga |
13849500 |
T |
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| Q |
122 |
aaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
221 |
Q |
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| T |
13849501 |
agccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcc |
13849600 |
T |
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| Q |
222 |
gagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgt |
290 |
Q |
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| T |
13849601 |
tagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgt |
13849669 |
T |
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