View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_high_6 (Length: 302)
Name: NF8146_high_6
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 7020314 - 7020604
Alignment:
| Q |
1 |
aatagttttatgatcaaaagaatataggaacatcaaatgtgacaaatctagctaatacaagtgtacaaaaaccatgatcattggtacggactaataaata |
100 |
Q |
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| T |
7020314 |
aatagttttatgatcaaaacaatataggaacatcaaatgtgacaaatctagctaatacaagtgtacaaaaaccatgatcattggtacggactaataaata |
7020413 |
T |
|
| Q |
101 |
ttgtcagaattactgccacaccaatttgtcattttcttgaaaaattgctgagtaagaaggatgcaaggagccactttggttccttaaccacaaacacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7020414 |
ttgtcagaattactgccacaccaatttgtcattttcttgaaaaattgctgagtaagaaggatgcaaggagccactttggttccttaaccacaaacacaga |
7020513 |
T |
|
| Q |
201 |
agtagnnnnnnntccaaaagataaaaaggcacttctgtgtacatggttgcatga----taataccttagcccgtgaactggatccttcttg |
287 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7020514 |
agtagaaaaaaatccaaaagataaaaaggcacttctgtgtacatggttgcatgataattaataccttagcccgtgaactggatccttcttg |
7020604 |
T |
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