View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8146_high_9 (Length: 244)

Name: NF8146_high_9
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8146_high_9
NF8146_high_9
[»] chr7 (42 HSPs)
chr7 (2-244)||(23191898-23192140)
chr7 (188-244)||(32308122-32308178)
chr7 (202-240)||(19992007-19992045)
chr7 (182-244)||(20549793-20549855)
chr7 (140-241)||(21880157-21880259)
chr7 (202-244)||(29787384-29787426)
chr7 (188-244)||(5548678-5548734)
chr7 (202-241)||(2424619-2424658)
chr7 (181-244)||(26733306-26733369)
chr7 (197-243)||(17851434-17851480)
chr7 (182-244)||(22868044-22868106)
chr7 (182-244)||(28155572-28155634)
chr7 (182-244)||(42720885-42720947)
chr7 (140-244)||(598210-598315)
chr7 (140-241)||(1401030-1401130)
chr7 (183-244)||(5835249-5835310)
chr7 (202-243)||(14729704-14729745)
chr7 (203-244)||(30731039-30731080)
chr7 (140-244)||(32287415-32287520)
chr7 (180-240)||(3721099-3721159)
chr7 (188-244)||(19206052-19206108)
chr7 (136-240)||(21864812-21864919)
chr7 (200-240)||(24339648-24339688)
chr7 (200-240)||(25481908-25481948)
chr7 (200-240)||(26033474-26033514)
chr7 (200-244)||(27945043-27945087)
chr7 (200-240)||(30813818-30813858)
chr7 (181-240)||(11061070-11061129)
chr7 (189-244)||(18035866-18035921)
chr7 (181-244)||(27093407-27093470)
chr7 (181-244)||(27184831-27184894)
chr7 (140-240)||(5409783-5409889)
chr7 (202-240)||(12289120-12289158)
chr7 (136-178)||(40131947-40131989)
chr7 (188-241)||(9482939-9482992)
chr7 (188-237)||(12843176-12843225)
chr7 (140-240)||(15680815-15680916)
chr7 (197-238)||(16341504-16341545)
chr7 (183-244)||(22484027-22484088)
chr7 (188-233)||(22602711-22602756)
chr7 (182-238)||(4909159-4909215)
chr7 (188-240)||(7328692-7328744)
[»] chr1 (56 HSPs)
chr1 (140-244)||(5898218-5898323)
chr1 (142-240)||(40181877-40181976)
chr1 (140-238)||(40258885-40258984)
chr1 (188-244)||(38503322-38503378)
chr1 (188-239)||(7918212-7918263)
chr1 (181-244)||(36878463-36878526)
chr1 (197-243)||(27471576-27471622)
chr1 (180-244)||(9709822-9709886)
chr1 (188-236)||(25361896-25361944)
chr1 (200-240)||(31015049-31015089)
chr1 (181-244)||(2896115-2896178)
chr1 (197-244)||(6427352-6427399)
chr1 (181-244)||(14332636-14332699)
chr1 (141-239)||(18190061-18190160)
chr1 (197-244)||(25098565-25098612)
chr1 (181-244)||(41877464-41877527)
chr1 (202-244)||(398780-398822)
chr1 (136-240)||(1486652-1486762)
chr1 (160-237)||(18337338-18337416)
chr1 (202-244)||(34298438-34298480)
chr1 (143-240)||(38078616-38078714)
chr1 (188-242)||(44482234-44482288)
chr1 (142-226)||(1815277-1815362)
chr1 (197-238)||(1864890-1864931)
chr1 (203-240)||(12443476-12443513)
chr1 (140-240)||(22515839-22515940)
chr1 (200-240)||(113305-113345)
chr1 (204-244)||(17831548-17831588)
chr1 (204-244)||(20157367-20157407)
chr1 (204-244)||(26238129-26238169)
chr1 (180-240)||(31672888-31672948)
chr1 (186-238)||(33351685-33351737)
chr1 (188-244)||(34371716-34371771)
chr1 (188-240)||(34712384-34712436)
chr1 (140-239)||(37598839-37598938)
chr1 (140-239)||(42359401-42359501)
chr1 (197-244)||(10233255-10233302)
chr1 (197-244)||(10572599-10572646)
chr1 (189-244)||(17754313-17754368)
chr1 (197-236)||(19324572-19324611)
chr1 (197-240)||(19562631-19562674)
chr1 (200-239)||(24577199-24577238)
chr1 (182-240)||(25452145-25452201)
chr1 (158-244)||(28674802-28674889)
chr1 (197-244)||(36905999-36906046)
chr1 (158-240)||(46348353-46348436)
chr1 (202-244)||(5376515-5376557)
chr1 (206-244)||(19909299-19909337)
chr1 (181-239)||(22881610-22881668)
chr1 (182-244)||(39953141-39953203)
chr1 (206-244)||(40285673-40285711)
chr1 (203-244)||(9828046-9828087)
chr1 (207-244)||(10474997-10475034)
chr1 (182-243)||(23636044-23636105)
chr1 (191-240)||(37055860-37055909)
chr1 (197-241)||(11605945-11605989)
[»] chr8 (36 HSPs)
chr8 (140-240)||(3025557-3025658)
chr8 (140-237)||(40332200-40332298)
chr8 (140-240)||(5813598-5813699)
chr8 (158-244)||(20679365-20679452)
chr8 (197-244)||(34897087-34897134)
chr8 (181-238)||(31557005-31557061)
chr8 (172-239)||(14134706-14134774)
chr8 (188-244)||(24362203-24362259)
chr8 (136-239)||(36450702-36450806)
chr8 (197-244)||(4611536-4611583)
chr8 (197-244)||(39954289-39954336)
chr8 (181-239)||(4948659-4948717)
chr8 (182-240)||(13844591-13844649)
chr8 (202-244)||(37283825-37283867)
chr8 (183-240)||(12606825-12606882)
chr8 (207-244)||(18067954-18067991)
chr8 (140-239)||(926740-926840)
chr8 (188-240)||(8343322-8343374)
chr8 (200-240)||(25566847-25566887)
chr8 (135-209)||(126294-126369)
chr8 (197-240)||(14731718-14731761)
chr8 (197-240)||(31236587-31236630)
chr8 (188-238)||(4786339-4786389)
chr8 (202-244)||(7658465-7658507)
chr8 (188-238)||(11927087-11927137)
chr8 (186-240)||(22197741-22197795)
chr8 (197-238)||(11803267-11803308)
chr8 (202-239)||(13203648-13203685)
chr8 (181-238)||(20873077-20873134)
chr8 (181-238)||(33405378-33405435)
chr8 (200-244)||(7442847-7442891)
chr8 (200-240)||(8342978-8343018)
chr8 (180-240)||(24613527-24613586)
chr8 (200-244)||(24669435-24669479)
chr8 (187-239)||(29447110-29447162)
chr8 (200-240)||(30077400-30077440)
[»] chr4 (37 HSPs)
chr4 (140-240)||(23292938-23293039)
chr4 (140-244)||(8423670-8423775)
chr4 (140-240)||(28964200-28964301)
chr4 (202-244)||(30982893-30982935)
chr4 (140-240)||(49431031-49431133)
chr4 (191-244)||(903924-903977)
chr4 (164-232)||(8402718-8402787)
chr4 (197-244)||(22440610-22440657)
chr4 (158-240)||(29205450-29205533)
chr4 (197-244)||(36635326-36635373)
chr4 (197-244)||(40613452-40613499)
chr4 (183-237)||(9996849-9996903)
chr4 (202-244)||(16189711-16189753)
chr4 (188-244)||(35723385-35723442)
chr4 (203-244)||(38148741-38148782)
chr4 (188-240)||(3947767-3947819)
chr4 (200-240)||(11596365-11596405)
chr4 (182-242)||(33950140-33950200)
chr4 (140-239)||(35157937-35158037)
chr4 (172-239)||(54580007-54580075)
chr4 (187-238)||(5775358-5775409)
chr4 (182-241)||(11135289-11135348)
chr4 (205-244)||(30522933-30522972)
chr4 (202-244)||(1747214-1747256)
chr4 (181-239)||(12797332-12797389)
chr4 (182-239)||(17425386-17425441)
chr4 (139-240)||(21945509-21945611)
chr4 (167-240)||(38846991-38847065)
chr4 (202-240)||(56257939-56257977)
chr4 (202-243)||(16184820-16184861)
chr4 (199-239)||(14465087-14465127)
chr4 (202-238)||(24343515-24343551)
chr4 (187-239)||(24613701-24613753)
chr4 (202-238)||(32910559-32910595)
chr4 (211-243)||(34200295-34200327)
chr4 (188-240)||(35952618-35952670)
chr4 (197-237)||(44796972-44797012)
[»] chr6 (52 HSPs)
chr6 (181-244)||(19040354-19040417)
chr6 (182-244)||(7265588-7265650)
chr6 (182-244)||(13360367-13360429)
chr6 (180-244)||(5732503-5732567)
chr6 (141-240)||(28152105-28152204)
chr6 (140-239)||(34595141-34595241)
chr6 (188-240)||(9025495-9025547)
chr6 (173-244)||(9658881-9658953)
chr6 (181-244)||(7377981-7378044)
chr6 (137-239)||(16833315-16833418)
chr6 (158-240)||(28715301-28715384)
chr6 (197-244)||(30866154-30866201)
chr6 (188-239)||(31384927-31384978)
chr6 (136-240)||(24645486-24645592)
chr6 (202-244)||(31579240-31579282)
chr6 (202-244)||(32511681-32511723)
chr6 (140-240)||(17841541-17841642)
chr6 (188-244)||(9027180-9027236)
chr6 (188-244)||(9629385-9629441)
chr6 (188-240)||(12696330-12696382)
chr6 (180-244)||(13851738-13851802)
chr6 (200-240)||(16766703-16766743)
chr6 (197-244)||(1532242-1532289)
chr6 (197-240)||(7086801-7086844)
chr6 (188-243)||(9617437-9617492)
chr6 (188-243)||(10294110-10294165)
chr6 (200-239)||(10770687-10770726)
chr6 (197-240)||(26562695-26562738)
chr6 (202-241)||(34073362-34073401)
chr6 (202-244)||(5462688-5462730)
chr6 (200-238)||(5970121-5970159)
chr6 (182-240)||(7977825-7977883)
chr6 (202-240)||(7996393-7996431)
chr6 (202-240)||(8022370-8022408)
chr6 (202-240)||(8805587-8805625)
chr6 (202-244)||(17341679-17341721)
chr6 (182-240)||(21924930-21924988)
chr6 (140-240)||(32978851-32978953)
chr6 (202-243)||(6665216-6665257)
chr6 (197-234)||(11591880-11591917)
chr6 (183-240)||(20370476-20370533)
chr6 (199-244)||(25096425-25096470)
chr6 (202-238)||(7569183-7569219)
chr6 (200-240)||(9107383-9107423)
chr6 (204-244)||(10842534-10842574)
chr6 (188-244)||(10888975-10889031)
chr6 (187-239)||(19044471-19044523)
chr6 (216-244)||(20371139-20371167)
chr6 (200-244)||(21395321-21395364)
chr6 (200-244)||(25038084-25038128)
chr6 (200-240)||(31959165-31959205)
chr6 (173-240)||(33001274-33001342)
[»] chr3 (48 HSPs)
chr3 (180-243)||(49505147-49505210)
chr3 (202-244)||(34307795-34307837)
chr3 (143-239)||(10954959-10955056)
chr3 (180-244)||(7928452-7928516)
chr3 (140-239)||(55401082-55401182)
chr3 (136-240)||(11251984-11252087)
chr3 (140-244)||(40993287-40993393)
chr3 (182-238)||(10268481-10268537)
chr3 (140-240)||(28918007-28918110)
chr3 (181-244)||(8383259-8383322)
chr3 (202-244)||(10690277-10690319)
chr3 (200-240)||(4987304-4987344)
chr3 (200-244)||(4990980-4991024)
chr3 (188-244)||(8039836-8039892)
chr3 (188-240)||(11313801-11313853)
chr3 (182-238)||(20691327-20691383)
chr3 (200-240)||(26508116-26508156)
chr3 (181-236)||(8789544-8789599)
chr3 (197-244)||(12704009-12704056)
chr3 (188-239)||(14209120-14209171)
chr3 (197-244)||(16192760-16192807)
chr3 (197-244)||(32804550-32804597)
chr3 (200-239)||(34910324-34910363)
chr3 (181-240)||(45451559-45451618)
chr3 (202-244)||(5407262-5407304)
chr3 (202-240)||(9624647-9624685)
chr3 (202-244)||(11493376-11493418)
chr3 (140-237)||(20503474-20503572)
chr3 (141-238)||(25775516-25775613)
chr3 (202-240)||(25948902-25948940)
chr3 (188-238)||(26290379-26290429)
chr3 (202-240)||(27277853-27277891)
chr3 (204-238)||(34189435-34189469)
chr3 (182-240)||(51206348-51206406)
chr3 (203-240)||(14979187-14979224)
chr3 (140-228)||(35222956-35223045)
chr3 (197-241)||(1438809-1438853)
chr3 (200-240)||(1509545-1509585)
chr3 (188-244)||(1550142-1550198)
chr3 (200-244)||(11610523-11610567)
chr3 (188-240)||(14832105-14832157)
chr3 (202-238)||(14840306-14840342)
chr3 (202-242)||(15812836-15812876)
chr3 (202-238)||(21211296-21211332)
chr3 (200-240)||(21256999-21257039)
chr3 (182-238)||(25093510-25093566)
chr3 (200-240)||(35994751-35994790)
chr3 (200-240)||(49651799-49651839)
[»] chr5 (35 HSPs)
chr5 (140-240)||(21191008-21191109)
chr5 (140-240)||(21576697-21576798)
chr5 (160-244)||(30502360-30502445)
chr5 (160-244)||(30542703-30542788)
chr5 (140-240)||(42893366-42893467)
chr5 (188-244)||(3966505-3966561)
chr5 (140-243)||(17593675-17593778)
chr5 (200-244)||(27932237-27932281)
chr5 (188-240)||(39698547-39698599)
chr5 (197-240)||(6471899-6471942)
chr5 (167-241)||(12927659-12927734)
chr5 (181-244)||(28588668-28588731)
chr5 (181-239)||(6247629-6247687)
chr5 (188-244)||(36838545-36838601)
chr5 (182-241)||(6326292-6326351)
chr5 (197-244)||(27144465-27144512)
chr5 (197-240)||(41091267-41091310)
chr5 (203-241)||(19438348-19438386)
chr5 (197-235)||(24273040-24273078)
chr5 (197-235)||(24389136-24389174)
chr5 (181-243)||(26312772-26312834)
chr5 (202-243)||(5467993-5468034)
chr5 (187-244)||(12264829-12264886)
chr5 (183-240)||(16203791-16203848)
chr5 (202-243)||(30098329-30098370)
chr5 (172-244)||(32630719-32630792)
chr5 (202-239)||(35017044-35017081)
chr5 (188-244)||(11685941-11685997)
chr5 (200-240)||(14674275-14674315)
chr5 (216-244)||(17123050-17123078)
chr5 (200-240)||(19579707-19579747)
chr5 (202-238)||(23016004-23016040)
chr5 (200-240)||(31084329-31084369)
chr5 (204-244)||(34879352-34879392)
chr5 (200-240)||(43001806-43001846)
[»] chr2 (37 HSPs)
chr2 (140-240)||(2438671-2438772)
chr2 (183-244)||(21091725-21091786)
chr2 (197-244)||(21616764-21616811)
chr2 (139-244)||(28677911-28678022)
chr2 (202-244)||(42832291-42832333)
chr2 (136-244)||(37411192-37411301)
chr2 (140-239)||(18840965-18841065)
chr2 (188-244)||(44860322-44860378)
chr2 (185-244)||(18276523-18276582)
chr2 (197-244)||(23718028-23718075)
chr2 (197-244)||(24105700-24105747)
chr2 (189-244)||(31808079-31808134)
chr2 (180-243)||(34691798-34691861)
chr2 (180-243)||(34714210-34714273)
chr2 (181-239)||(5367199-5367257)
chr2 (202-240)||(21782833-21782871)
chr2 (140-240)||(37558983-37559084)
chr2 (140-240)||(38117111-38117212)
chr2 (204-244)||(29970566-29970606)
chr2 (200-240)||(30717543-30717583)
chr2 (200-244)||(39323266-39323310)
chr2 (204-242)||(18889608-18889646)
chr2 (202-244)||(25846743-25846785)
chr2 (202-244)||(28412352-28412394)
chr2 (200-238)||(30404863-30404901)
chr2 (192-238)||(35449521-35449567)
chr2 (184-238)||(44605136-44605190)
chr2 (203-244)||(22084848-22084889)
chr2 (202-243)||(23921256-23921297)
chr2 (194-243)||(36281688-36281737)
chr2 (204-240)||(896217-896253)
chr2 (206-238)||(2331802-2331834)
chr2 (204-244)||(10535776-10535816)
chr2 (159-238)||(15972881-15972961)
chr2 (188-244)||(18570974-18571030)
chr2 (180-239)||(19536390-19536450)
chr2 (200-240)||(21374712-21374752)
[»] scaffold0049 (1 HSPs)
scaffold0049 (182-244)||(63775-63837)
[»] scaffold0652 (1 HSPs)
scaffold0652 (140-240)||(414-515)
[»] scaffold0004 (1 HSPs)
scaffold0004 (191-244)||(92809-92862)
[»] scaffold0223 (1 HSPs)
scaffold0223 (188-240)||(20178-20230)
[»] scaffold0123 (1 HSPs)
scaffold0123 (197-244)||(44535-44582)
[»] scaffold0361 (1 HSPs)
scaffold0361 (141-239)||(14537-14633)
[»] scaffold0044 (1 HSPs)
scaffold0044 (202-243)||(53183-53224)
[»] scaffold0103 (1 HSPs)
scaffold0103 (200-240)||(51817-51857)
[»] scaffold0020 (1 HSPs)
scaffold0020 (188-240)||(135313-135365)
[»] scaffold0008 (1 HSPs)
scaffold0008 (188-240)||(263373-263425)
[»] scaffold1528 (1 HSPs)
scaffold1528 (189-244)||(1037-1092)
[»] scaffold0306 (1 HSPs)
scaffold0306 (200-239)||(13407-13446)
[»] scaffold0152 (1 HSPs)
scaffold0152 (200-239)||(21881-21920)
[»] scaffold0036 (1 HSPs)
scaffold0036 (188-239)||(9748-9799)
[»] scaffold0136 (1 HSPs)
scaffold0136 (188-238)||(3850-3900)
[»] scaffold0053 (1 HSPs)
scaffold0053 (143-240)||(8804-8902)
[»] scaffold0027 (1 HSPs)
scaffold0027 (200-238)||(46690-46728)
[»] scaffold0018 (2 HSPs)
scaffold0018 (187-239)||(178818-178871)
scaffold0018 (200-244)||(192262-192306)
[»] scaffold0066 (1 HSPs)
scaffold0066 (200-240)||(33376-33416)
[»] scaffold0050 (1 HSPs)
scaffold0050 (167-238)||(70286-70358)
[»] scaffold0022 (1 HSPs)
scaffold0022 (202-238)||(90851-90887)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 23192140 - 23191898
Alignment:
Q  2 gcactgatacaacagcacatgaatttacatttgaatactttagtttattaaattattaacagcatccgcgtgtctgcgtcaatgtttcatagattaacac 101  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23192140 gcaccgatacaacagcacatgtagttacatttgaatactttagtttattaaattattaacagcatccgcgtgtctgcgtcaatgtttcatagattaacac 23192041  T
Q  102 aacaaattcaaaagaaatttatgaaacacagagtcacagacactcctccgattaaacgtgtccctgtgttggacacgtgcgtgtctgacactgaaacatg 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23192040 aacaaattcaaaagaaatgtatgaaacacagagtcacagacactcctccgattaaacgtgtccctgtgttggacacgtgcgtgtctgacactgaaacatg 23191941  T
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23191940 taattacactgaaatatgtgattttctcaaattattagcggtg 23191898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 32308178 - 32308122
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||    
T  32308178 gacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtg 32308122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 19992045 - 19992007
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19992045 taattacactgaaatatgtgattttctcaaattattagc 19992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 20549855 - 20549793
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||||| || |||| ||||||||||||| || ||||||||||||||||||||||||||    
T  20549855 gtgtccgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtg 20549793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 21880259 - 21880157
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| ||| |||||  |||||||  |||| ||||| ||| |||||| ||||| || || ||||||||||||||| ||||| |||||||||||||||||    
T  21880259 gacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T
Q  239 gcg 241  Q
    |||    
T  21880159 gcg 21880157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 29787384 - 29787426
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  29787384 taattacactgaattatgtgattttctcaaattattagcggtg 29787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 5548734 - 5548678
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||| ||||||||||||| ||| ||||||||||||||||| |||||||    
T  5548734 gacactgacacatataattacactgaattatttgattttctcaaattatcagcggtg 5548678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 2424658 - 2424619
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcg 241  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  2424658 taattacactgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 26733369 - 26733306
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || |||| |||||| |||||| ||||||||||| |||||||||||||||||    
T  26733369 cgtgtccgacaccgacacatttaattagactgaattatgtgattttgtcaaattattagcggtg 26733306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 17851480 - 17851434
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  17851480 acatataattacactgaattatgtgattttctaaaattattagcggt 17851434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 22868106 - 22868044
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||| ||||| |||| ||||||||||||| ||||||||||||||| |||||||| ||||    
T  22868106 gtgtttgatactgacacatataattacactgaattatgtgattttctcatattattagtggtg 22868044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 28155634 - 28155572
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||||| || || ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  28155634 gtgtccgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattagcggtg 28155572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 42720885 - 42720947
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| |||||||| |||| |||||||| | || ||||||||||| |||||||||||||||||    
T  42720885 gtgtcagacactgacacatataattacatttaattatgtgattttttcaaattattagcggtg 42720947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 598315 - 598210
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| ||| |||||  |||||||| |||| ||||||||| |||||||||||| || || |  ||||||| | || || |||||||||| |||||||||    
T  598315 gacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattatta 598216  T
Q  239 gcggtg 244  Q
    ||||||    
T  598215 gcggtg 598210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 1401130 - 1401030
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtgcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||||| |||||   |||||||  ||| ||||| || |||||| ||||| || || | ||||||||||||| ||||||| ||||||||||||||||    
T  1401130 gacactcctcagattaggtgtgtcccgatgtcggacatgt-cgtgtcggacaccgatacttataattacactgaattatgtgagtttctcaaattattag 1401032  T
Q  240 cg 241  Q
    ||    
T  1401031 cg 1401030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 5835310 - 5835249
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||| || |||| ||||||||||||| ||||| ||||||||||| |||||| ||||    
T  5835310 tgtctgacaccgacacatataattacactgaattatgttattttctcaaactattagtggtg 5835249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 14729745 - 14729704
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  14729745 taattacactgaattacgtgattttctcaaattattagcggt 14729704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 30731080 - 30731039
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  30731080 aattacactgaattatgtgattttctcaaattattcgcggtg 30731039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 32287415 - 32287520
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||   ||||||| |||| |||||| || | |||| ||||| || |||| || || ||||||| ||||||||||||||| |||||||    
T  32287415 gacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatgtgattttctcagattatta 32287514  T
Q  239 gcggtg 244  Q
    ||||||    
T  32287515 gcggtg 32287520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 3721159 - 3721099
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| ||||| || |||| |||||| ||| || |||||||||||||||||||||||||    
T  3721159 gcgtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattattagc 3721099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 19206108 - 19206052
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| |||||| | |||| |||||||||||||||||||||||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtg 19206052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 21864919 - 21864812
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtga--ttttctcaaa 232  Q
    ||||||||||||||  |||| ||||||||| |||| ||||||||| |||||| ||||  || || |||||||||||| || ||| |||  |||| |||||    
T  21864919 cacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacactaaattatatgattttttttcaaa 21864820  T
Q  233 ttattagc 240  Q
    ||||||||    
T  21864819 ttattagc 21864812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 24339688 - 24339648
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  24339688 tgtaattacactgaattatgtgattttttcaaattattagc 24339648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 25481948 - 25481908
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  25481948 tgtaattacactgaattatgtgattttttcaaattattagc 25481908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 26033474 - 26033514
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  26033474 tgtaattacactgaattatgtgattttttcaaattattagc 26033514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27945087 - 27945043
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||    
T  27945087 tgtaattacactgaattatgtaattttctcaaattattagtggtg 27945043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 30813858 - 30813818
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  30813858 tgtaattacactgaattatgtaattttctcaaattattagc 30813818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 11061070 - 11061129
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| || || |||||||| ||| || ||||||||||| |||||||||||||    
T  11061070 cgtgtctgacaccgacacttgtaattatactaaattatgtgattttttcaaattattagc 11061129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 18035866 - 18035921
Alignment:
Q  189 acactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||||||||||| ||||| |||||||||| || ||||||| |||||||    
T  18035866 acactgacacatgtaattacgctgaattatgtgatttcctaaaattatcagcggtg 18035921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 27093407 - 27093470
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||| ||  ||| |||||||||| || ||||||||||||| |||||||||||||||    
T  27093407 cgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtg 27093470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 27184894 - 27184831
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||| ||  ||| |||||||||| || ||||||||||||| |||||||||||||||    
T  27184894 cgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtg 27184831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 5409783 - 5409889
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacact-----gaaacatgtaattacactgaaatatgtgattttctcaaat 233  Q
    |||||||||| |||||  |||||||| |||| ||||||||| |||||| |||||      || || ||||||| ||||||| ||||||||||| ||||||    
T  5409783 gacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgtgattttttcaaat 5409882  T
Q  234 tattagc 240  Q
    |||||||    
T  5409883 tattagc 5409889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 12289158 - 12289120
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  12289158 taattccactgaattatgtgattttctcaaattattagc 12289120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 40131947 - 40131989
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacg 178  Q
    |||||||||||||| ||||| |||||||||||||| |||||||    
T  40131947 cacagacactcctcggattagacgtgtccctgtgtcggacacg 40131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 9482992 - 9482939
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    ||||| || |||| ||||||||||||| | ||||||||||||||||||| ||||    
T  9482992 gacaccgacacatataattacactgaattgtgtgattttctcaaattatcagcg 9482939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 12843176 - 12843225
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    |||||||| ||||||||||||| |||| ||||| ||||| ||||||||||    
T  12843176 gacactgacacatgtaattacattgaattatgtaattttatcaaattatt 12843225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 15680916 - 15680815
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||  |||| ||||||| | |||| ||||||||| |||||| ||||| || || | |||||||||| || ||||||||||| |  ||||||||    
T  15680916 gacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgattttttttaattatta 15680817  T
Q  239 gc 240  Q
    ||    
T  15680816 gc 15680815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 16341545 - 16341504
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  16341545 acatataattacacttaattatgtgattttctcaaattatta 16341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 22484088 - 22484027
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||| || |||| |||||| |||||| ||||  ||||||| |||||||||||||||    
T  22484088 tgtctgacaccgacacatataattatactgaattatgcaattttctaaaattattagcggtg 22484027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 22602711 - 22602756
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaat 233  Q
    ||||| || |||| ||||||||||||| ||||||||||||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 4909215 - 4909159
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||| |||||||| |||| | |||||| |||| ||||| |||||||||||||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattatta 4909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 7328692 - 7328744
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| || |||| |||||||||| || ||||| |||||||||||||||||||    
T  7328692 gacaccgacacatataattacactaaattatgttattttctcaaattattagc 7328744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 56)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 5898218 - 5898323
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||||||||||| ||  ||| ||||||||||||| ||||||||||| ||| |||||||    
T  5898218 gacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgattttttcagattatta 5898317  T
Q  239 gcggtg 244  Q
    ||||||    
T  5898318 gcggtg 5898323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 40181976 - 40181877
Alignment:
Q  142 cactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||||  |||||||| |||| |||||||||  ||||| ||||| || |||| ||||||||||||| |||||||||||||||||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattattagc 40181877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 40258885 - 40258984
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||  |||| ||||| ||| |||||||||||| || || ||||||||||||||| ||||||||||| |||||||||||    
T  40258885 gacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 40258984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 38503378 - 38503322
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38503378 gacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtg 38503322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 7918212 - 7918263
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 36878526 - 36878463
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || || | ||||||||||||| |||||||||||||||||||||||||||||    
T  36878526 cgtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtg 36878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 27471576 - 27471622
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  27471576 acatgtaattacactgaattatgtgcttttctcaaattattagcggt 27471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 9709886 - 9709822
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| ||||| || |||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  9709886 gcgtgtccgacaccgacacatataattacaacgaattatgtgattttctcaaattattagcggtg 9709822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25361944 - 25361896
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattat 236  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  25361944 gacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31015089 - 31015049
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  31015089 tgtaattacactgaattatgtgattttctcaaattattagc 31015049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 2896115 - 2896178
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| || | || ||  ||||||||| |||||||||||||||||||||||||||||    
T  2896115 cgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtg 2896178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 6427399 - 6427352
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  6427399 acatataattacattgaattatgtgattttctcaaattattagcggtg 6427352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 14332636 - 14332699
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || |||| |||||||||| || |||||||||||||||||||||||| ||||    
T  14332636 cgtgtccgacaccgagacatataattacactaaattatgtgattttctcaaattattagtggtg 14332699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 18190061 - 18190160
Alignment:
Q  141 acactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||| |||||   ||||||| |||| |||||||||  ||||||||||  || || ||||||||||||||| ||||| ||||| ||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaattttttcaaattattag 18190160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 25098565 - 25098612
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  25098565 acatataattacactgaattatgtgattttctcaaattatcagcggtg 25098612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 41877464 - 41877527
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || || |||||||||||| || ||||| |||||||||||||||||||||||    
T  41877464 cgtgtccgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtg 41877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 398780 - 398822
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  398780 taattacactgaattatgtgattttttcaaattattagcggtg 398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 1486652 - 1486762
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacact-----gaaacatgtaattacactgaaatatgtgattttctc 229  Q
    |||||||||||||| |||||  |||||||| |||| ||||||||| |||||| |||||      || || | ||||||||||||| ||||||||||| ||    
T  1486652 cacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttc 1486751  T
Q  230 aaattattagc 240  Q
    |||||||||||    
T  1486752 aaattattagc 1486762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 18337416 - 18337338
Alignment:
Q  160 tgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    |||||| |||| |||||||||  ||||| ||||| || || ||||||||||||||| ||||||||||| ||||||||||    
T  18337416 tgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 18337338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 34298480 - 34298438
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  34298480 taattacactgaattatgtgattttctcaaattattagtggtg 34298438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 38078616 - 38078714
Alignment:
Q  143 actcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| |||||  |||||||  |||||| ||| ||| |||||| ||||| || || |||||||||| |||| ||||||||||| |||||||||||||    
T  38078616 actcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagc 38078714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 44482288 - 44482234
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcgg 242  Q
    ||||| || |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 1815362 - 1815277
Alignment:
Q  142 cactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgatttt 226  Q
    |||||||| |||||  |||||||| |||| ||||| ||| |||||| ||||| || || ||||||||||||||| |||||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgatttt 1815277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 1864890 - 1864931
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  1864890 acatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 12443476 - 12443513
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12443476 aattacactgaattatgtgattttctcaaattattagc 12443513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 22515839 - 22515940
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||| | |||| ||| | ||| |||||| ||||| || || |||||||||||| || ||||||||||| |||||||||||    
T  22515839 gacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattatta 22515938  T
Q  239 gc 240  Q
    ||    
T  22515939 gc 22515940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 113345 - 113305
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  113345 tgtaattacactgaattatgtgattttttcaaattattagc 113305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 17831548 - 17831588
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  17831548 attacactgaataatgtgattttctcaaattattagcggtg 17831588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 20157367 - 20157407
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  20157367 attacactgaattatgtgattttctcacattattagcggtg 20157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 26238129 - 26238169
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  26238129 attacactgaattatgttattttctcaaattattagcggtg 26238169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 31672888 - 31672948
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| ||||| || || ||||||||||||||| || |||||||| |||||||||||||    
T  31672888 gcgtgtccgacaccgagacttgtaattacactgaattaagtgattttttcaaattattagc 31672948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 33351737 - 33351685
Alignment:
Q  186 ctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||||||||||| ||| ||| | |||||||||||||||||    
T  33351737 ctgacactgacacatgtaattacaccgaagtattttattttctcaaattatta 33351685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 34371771 - 34371716
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  34371771 gacaccgacacatataattacactgaattatgtgattttctc-aattattagcggtg 34371716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 34712384 - 34712436
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||| |||||||||| || ||||| |||||||||||||||||||    
T  34712384 gacactgacacatataattacactaaattatgttattttctcaaattattagc 34712436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 37598938 - 37598839
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  ||||||||  ||| ||||||||| |||||| ||||| || || | ||||||||||||| | ||||||||| |||||||||||    
T  37598938 gacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt-tgtgattttttcaaattatta 37598840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 42359401 - 42359501
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| |||| ||||||  | | |||| ||||| || || ||||||||||||||| | ||||||||| |||||||||||    
T  42359401 gacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaattatta 42359500  T
Q  239 g 239  Q
    |    
T  42359501 g 42359501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 10233302 - 10233255
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| |||||||||||||||| ||||||| ||||    
T  10233302 acatataattacactgaattatgtgattttctcaatttattagtggtg 10233255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 10572599 - 10572646
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||| ||| |||||||||||||||||||||||| ||||    
T  10572599 acatttaattacaccgaattatgtgattttctcaaattattagtggtg 10572646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 17754368 - 17754313
Alignment:
Q  189 acactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||| || |||||||||| ||||| ||||| |||||||||||||||||    
T  17754368 acactgacacatatagttacactgaattatgtaattttttcaaattattagcggtg 17754313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 19324611 - 19324572
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattat 236  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  19324611 acatataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 19562631 - 19562674
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||    
T  19562631 acatataattacactgaactatgagattttctcaaattattagc 19562674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 24577199 - 24577238
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  24577199 tgtaattacactgaattatgtgattttttcaaattattag 24577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 25452145 - 25452201
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||| || ||||  |||||||||||| |||| ||||||||||||||||||||    
T  25452145 gtgtctgacaccgacacat--aattacactgaattatgagattttctcaaattattagc 25452201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 28674889 - 28674802
Alignment:
Q  158 cgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| | |||||||||| ||| ||||||||||||  | | || |||||| |||||| ||||| ||||||||||||||||| |||||    
T  28674889 cgtgtctcagtgttggacaagtgtcgtgtctgacaccaacatatataattatactgaattatgtaattttctcaaattattaacggtg 28674802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 36906046 - 36905999
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  36906046 acatataattactctgaattatgtgattttctcagattattagcggtg 36905999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 46348353 - 46348436
Alignment:
Q  158 cgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||| | |||| ||||||||| |||||| ||||| || || |||||||||||| || ||| ||||||| |||||||||||||    
T  46348353 cgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatgattttttcaaattattagc 46348436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 5376515 - 5376557
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  5376515 taattacactgaattatgttattttcttaaattattagcggtg 5376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 19909337 - 19909299
Alignment:
Q  206 tacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  19909337 tacactgagttatgtgattttctcaaattattagcggtg 19909299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 22881610 - 22881668
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| ||||| || || |||||||||||| || ||||||||||| ||||||||||||    
T  22881610 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 22881668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 39953141 - 39953203
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||||| || ||||  ||||||||| || ||||||||||||| |||||||||||||||    
T  39953141 gtgtccgacaccgacacatacaattacactaaattatgtgattttctaaaattattagcggtg 39953203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 40285673 - 40285711
Alignment:
Q  206 tacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  40285673 tacactgaattatgcgattttctcaaattattagcggtg 40285711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 9828087 - 9828046
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| ||||||||||| |||||||||||| ||||    
T  9828087 aattacactgaattatgtgattttatcaaattattagtggtg 9828046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 10474997 - 10475034
Alignment:
Q  207 acactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  10474997 acactgaattatgtgattttctcaagttattagcggtg 10475034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 23636044 - 23636105
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||||||| || ||||  |||||||||||| ||||| ||||||||||||| || |||||    
T  23636044 gtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatttttggcggt 23636105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 37055860 - 37055909
Alignment:
Q  191 actgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| || |||||||||||| || ||||| |||||||||||||||||||    
T  37055860 actgatacttgtaattacactaaattatgtaattttctcaaattattagc 37055909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 11605945 - 11605989
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    |||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  11605945 acatgtaatttcactgaattatatgattttttcaaattattagcg 11605989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 3025658 - 3025557
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||| | ||||  |||||||| |||||| |||||||| || | ||||||||||||| |||||||||||||||||||||||    
T  3025658 gacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattttctcaaattatta 3025559  T
Q  239 gc 240  Q
    ||    
T  3025558 gc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 40332298 - 40332200
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    |||||||||| |||||  || ||||| |||| ||||||||| ||||||  |||| || || ||||||||||||||| ||||||||||||||||||||||    
T  40332298 gacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 5813699 - 5813598
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||| ||||  |||||||| |||| ||||||||| |||||| ||||| || || |||| ||||||| |||||||||| ||| |||||||||||    
T  5813699 gacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacactaaaatatgtgactttttcaaattatta 5813600  T
Q  239 gc 240  Q
    ||    
T  5813599 gc 5813598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 20679365 - 20679452
Alignment:
Q  158 cgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||| |||||||||  | ||||||||| || || | ||||||||||||| |||||||||||||||||||||||| ||||    
T  20679365 cgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattattaggggtg 20679452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 34897134 - 34897087
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  34897134 acatataattacactgaattatgtgattttctcaaattattagcggtg 34897087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 31557061 - 31557005
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  31557061 cgtgtctgacaccgaaacttgtaattacactgaattatgtgatttt-tcaaattatta 31557005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 14134774 - 14134706
Alignment:
Q  172 ggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||| ||||| |||||| || | || ||||||||||||| ||||||||||||||||||||||||    
T  14134774 ggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 24362203 - 24362259
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||| |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  24362203 gacattgacacatataattacactgaattatgtgattctctcaaattattagcggtg 24362259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 36450702 - 36450806
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaatt 234  Q
    |||||||||||||| |||||  |||||||  |||| ||||||| | |||||| |||||  | || ||||||||||||||| | ||||||||| |||||||    
T  36450702 cacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaatt 36450801  T
Q  235 attag 239  Q
    |||||    
T  36450802 attag 36450806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 4611583 - 4611536
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagcggtg 4611536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 39954289 - 39954336
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||    
T  39954289 acatataattacactaaattatgtgattttctcaaattattagcggtg 39954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 4948717 - 4948659
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| ||||| || || ||||||||||||||| ||||||||||| ||||||||||||    
T  4948717 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 4948659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 13844591 - 13844649
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| ||||| || |||| |||||||||| || |||||||||||||||||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagc 13844649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 37283825 - 37283867
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  37283825 taattacactgaattatgtgattttctcagattattagcggtg 37283867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 12606825 - 12606882
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| || |||| |||||||| |||| ||| |||||||||||||||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattattagc 12606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 18067954 - 18067991
Alignment:
Q  207 acactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||||||||||||||||||||||||||||    
T  18067954 acactgaattatgtgattttctcaaattattagcggtg 18067991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 926740 - 926840
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| ||| || | |||||| |||| ||||||||| || ||| ||||| || || | |||||||||||||  ||| ||||||||||||||||||    
T  926740 gacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacactgaacaatgagattttctcaaattatta 926839  T
Q  239 g 239  Q
    |    
T  926840 g 926840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8343374 - 8343322
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || |||||||||||| || ||||||||||| |||||||||||||    
T  8343374 gacactgacacttgtaattacactaaattatgtgattttttcaaattattagc 8343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 25566887 - 25566847
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  25566887 tgtaattacactgaattatgtgattttttcaaattattagc 25566847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 126294 - 126369
Alignment:
Q  135 tcacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattaca 209  Q
    |||| |||||||||| |||||  |||||||| || ||||||||||| |||||| |||||||| |||| ||||||||    
T  126294 tcacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 14731761 - 14731718
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| |||||||||| || |||||||||||||||||||||||||    
T  14731761 acatataattacactaaattatgtgattttctcaaattattagc 14731718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 31236587 - 31236630
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| |||||||| |||| |||||||||||||||||||||||||    
T  31236587 acatataattacattgaattatgtgattttctcaaattattagc 31236630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 4786339 - 4786389
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||| || |||| ||||||||||||| ||||||||||||| |||||||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 7658507 - 7658465
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||    
T  7658507 taattacactgaattatgtaattttctcaaattattagtggtg 7658465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 11927087 - 11927137
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||| || |||| ||||||||||||| ||||||||||| |||||||||||    
T  11927087 gacaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 22197741 - 22197795
Alignment:
Q  186 ctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| || |||||||||||| || ||||||| ||| |||||||||||||    
T  22197741 ctgacactgacacttgtaattacactaaattatgtgaatttttcaaattattagc 22197795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 11803308 - 11803267
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  11803308 acatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 13203685 - 13203648
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  13203685 taattacactgaattatgtaattttctcaaattattag 13203648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 20873134 - 20873077
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| ||||| || || |||||||||||| || ||||||||||| |||||||||||    
T  20873134 cgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattatta 20873077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 33405378 - 33405435
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| ||||| || |||| |||||||||| || |||||| ||||||||||||||||    
T  33405378 cgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattatta 33405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 7442891 - 7442847
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| ||||| | |||||||||||||||    
T  7442891 tgtaattacactgaattatgtaattttatgaaattattagcggtg 7442847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 8343018 - 8342978
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  8343018 tgtaattacactaaattatgtgattttttcaaattattagc 8342978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 24613586 - 24613527
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| ||||| || || |||||||||||| || ||||||||||| |||||||||||||    
T  24613586 gcgtgtccgacaccgacacttgtaattacacttaattatgtgatttt-tcaaattattagc 24613527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 24669479 - 24669435
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| |||| |||||||||||| |||||    
T  24669479 tgtaattacactgaattatgtaatttcctcaaattattaacggtg 24669435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 29447110 - 29447162
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| || || |||| ||||| |||| ||||||||||||||||||||||||    
T  29447110 tgacaccgacacttgtagttacattgaattatgtgattttctcaaattattag 29447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 30077400 - 30077440
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  30077400 tgtaattacactgaattatgtgatgttttcaaattattagc 30077440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 23292938 - 23293039
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| |||| ||||||||| |||||| ||||| || || |||||||| |||||| ||||||||||| |||||||||||    
T  23292938 gacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaaattatta 23293037  T
Q  239 gc 240  Q
    ||    
T  23293038 gc 23293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 8423670 - 8423775
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| |||||||||  |||||||| |||| |||||  || |||||| ||||| || |  | ||||||||||||| |||||||||||||||||||||||    
T  8423670 gacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T
Q  239 gcggtg 244  Q
    ||||||    
T  8423770 gcggtg 8423775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 28964200 - 28964301
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| |||| ||| | ||| |||||| ||||| || || ||||||||||||||| ||||||||||| |||||||||||    
T  28964200 gacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgattttttcaaattatta 28964299  T
Q  239 gc 240  Q
    ||    
T  28964300 gc 28964301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 30982893 - 30982935
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  30982893 taattacactgaaatatgtgattttctcaaatcattagcggtg 30982935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 49431133 - 49431031
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtga-ttttctcaaattatt 237  Q
    |||||||||| ||| |  |||||||| |||||||||||||| |||||| ||||| || || | ||||||||||||| ||||||| |||| ||||||||||    
T  49431133 gacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttttttcaaattatt 49431034  T
Q  238 agc 240  Q
    |||    
T  49431033 agc 49431031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 903977 - 903924
Alignment:
Q  191 actgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  903977 actgatacatataattacactgaattatgtgattttctcaaattattaacggtg 903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 8402718 - 8402787
Alignment:
Q  164 cctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaa 232  Q
    ||||||| ||||| ||| ||||||||||||||| |||| ||||||||||||| ||| |||||||||||||    
T  8402718 cctgtgtcggacaagtgtcgtgtctgacactgagacatataattacactgaattatatgattttctcaaa 8402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 22440610 - 22440657
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  22440610 acatataattacactgaattatgtgattttctcaaattattaacggtg 22440657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 29205533 - 29205450
Alignment:
Q  158 cgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||| ||||| ||| ||||||  |||| || || ||||||||||||||| ||||||||||| |||||||||||||    
T  29205533 cgtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgattttttcaaattattagc 29205450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 36635373 - 36635326
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  36635373 acatataattacactgaattatgtgattttctcaaattattagtggtg 36635326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 40613499 - 40613452
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  40613499 acatataattacactgaattatgtgattttctcaaaatattagcggtg 40613452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 9996903 - 9996849
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    |||||||||| || |||| |||||| |||||| ||||||||||||||||||||||    
T  9996903 tgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 16189753 - 16189711
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  16189753 taattacactgaattatgtgattttctcaaatttttagcggtg 16189711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 35723385 - 35723442
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtg-attttctcaaattattagcggtg 244  Q
    |||||||| |||| |||||||| |||| |||||| |||||||||||||||||||||||    
T  35723385 gacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtg 35723442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 38148741 - 38148782
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  38148741 aattacactgaattatgtgattttctcaaactattagcggtg 38148782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 3947767 - 3947819
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || ||||||||||||||| |||| |||||| |||||||||||||    
T  3947767 gacactgacacttgtaattacactgaattatgcgattttttcaaattattagc 3947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 11596365 - 11596405
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  11596365 tgtaattacactgaattatgtgattttttcaaattattagc 11596405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 33950200 - 33950140
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcgg 242  Q
    ||||||||||| || |||| | |||||| | || |||||||||||||||||||||||||||    
T  33950200 gtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattagcgg 33950140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 35157937 - 35158037
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| ||| |||||| ||||| || |||||||||| ||| |||||| ||||| || || | |||||||||| || |||||||||||  ||||||||||    
T  35157937 gacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattatta 35158036  T
Q  239 g 239  Q
    |    
T  35158037 g 35158037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 54580007 - 54580075
Alignment:
Q  172 ggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||| |||||| ||||| || || | ||||||||||||| ||||||||||| ||||||||||||    
T  54580007 ggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgattttttcaaattattag 54580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 5775358 - 5775409
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||| || |||| |||||||||| || |||||||||||||||||||||||    
T  5775358 tgacaccgacacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 11135289 - 11135348
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    |||||||||| ||| ||||||||||| | |||| ||||| ||||||||||| ||||||||    
T  11135289 gtgtctgacagtgacacatgtaattatattgaattatgtaattttctcaaactattagcg 11135348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 30522933 - 30522972
Alignment:
Q  205 ttacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  30522933 ttacactgaattatgtgattttctcaaataattagcggtg 30522972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 1747256 - 1747214
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| |||||| |||||||||||||||| ||||||||||||    
T  1747256 taattaaactgaattatgtgattttctcaatttattagcggtg 1747214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 12797332 - 12797389
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| ||||| || || ||||||||||||||| ||||||||||| ||||||||||||    
T  12797332 cgtgtccgacaccgacacttgtaattacactgaattatgtgatttt-tcaaattattag 12797389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 17425386 - 17425441
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||| || ||||  |||||||||||| |||| |||||||||||||||||||    
T  17425386 gtgtctgacacagacacat--aattacactgaattatgcgattttctcaaattattag 17425441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 21945611 - 21945509
Alignment:
Q  139 agacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    ||||||||||| |||||  |||||  | |||| ||||| ||| | |||| ||||| || || ||||||||||||||| ||||| ||||| ||||||||||    
T  21945611 agacactcctcggattaggcgtgttgcggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattatt 21945512  T
Q  238 agc 240  Q
    |||    
T  21945511 agc 21945509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 38846991 - 38847065
Alignment:
Q  167 gtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||||||| ||| || |||||||| || |||||||||||||||  || ||||||| |||||||||||||    
T  38846991 gtgtcggacacgtgtcgtatccgacactgacacttgtaattacactgaataatatgattttttcaaattattagc 38847065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 56257977 - 56257939
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  56257977 taattacactgaattatatgattttctcaaattattagc 56257939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 16184861 - 16184820
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||| ||||||| | ||||||||||||||||||||||||||    
T  16184861 taatttcactgaattgtgtgattttctcaaattattagcggt 16184820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 14465087 - 14465127
Alignment:
Q  199 atgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||| |||| ||||||||||| ||||||||||||    
T  14465087 atgtaattacattgaattatgtgattttttcaaattattag 14465127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 24343551 - 24343515
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  24343551 taattacactgaattatgtaattttctcaaattatta 24343515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 24613701 - 24613753
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| || || |||| ||||| |||| ||||||||||||||||||||||||    
T  24613701 tgacaccgacacttgtacttacattgaattatgtgattttctcaaattattag 24613753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 32910595 - 32910559
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  32910595 taattacactgaattatgtcattttctcaaattatta 32910559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 34200295 - 34200327
Alignment:
Q  211 tgaaatatgtgattttctcaaattattagcggt 243  Q
    |||| ||||||||||||||||||||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagcggt 34200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 35952618 - 35952670
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||| |||||||| |||| ||| ||||||| |||||||||||||    
T  35952618 gacactgatacatataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 44796972 - 44797012
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    ||||||||||||| |||| ||||| ||||||||||||||||    
T  44796972 acatgtaattacattgaattatgttattttctcaaattatt 44797012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 19040417 - 19040354
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  19040417 cgtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtg 19040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 7265588 - 7265650
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtg 7265650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 13360367 - 13360429
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||| ||||    
T  13360367 gtgtctgacaccgaaacatataattacactgaattatgtgattttctcaaattactagtggtg 13360429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 5732503 - 5732567
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| ||||| || |||| |||||||||| |||||||||||||||||||||||||| |||||    
T  5732503 gcgtgtccgacaccgacacatataattacactaaaatatgtgattttctcaaattattaacggtg 5732567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 28152204 - 28152105
Alignment:
Q  141 acactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||| |||||  | |||||| |||| ||||||||| |||||| ||||| || || ||||||||||||||| ||||||||||| ||||||||||||    
T  28152204 acactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt-tcaaattattag 28152106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 34595241 - 34595141
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||   ||||||| ||||  |||||||| |||||| ||||| || || ||||||||||||||| ||||||||||| |||||||||||    
T  34595241 gacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 34595142  T
Q  239 g 239  Q
    |    
T  34595141 g 34595141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 9025495 - 9025547
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| || |||| ||||||||||||| |||||||||||||||||||||||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttctcaaattattagc 9025547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 9658953 - 9658881
Alignment:
Q  173 gacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| ||||||| |||| || | || ||||||||||||| ||||||||||||| |||||||||||||||    
T  9658953 gacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtg 9658881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 7378044 - 7377981
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || |||| |||||||| |||| ||||||||||||||||||| |||||||||    
T  7378044 cgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtg 7377981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 16833418 - 16833315
Alignment:
Q  137 acagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaatta 235  Q
    ||||||||||||| ||||    ||||||  |||| |||| |||| ||||||| |||| || || ||||||||||||||| ||||||||||| ||||||||    
T  16833418 acagacactcctcggattcggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaagtatgtgattttttcaaatta 16833319  T
Q  236 ttag 239  Q
    ||||    
T  16833318 ttag 16833315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 28715384 - 28715301
Alignment:
Q  158 cgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||| | ||||||| |||||| ||||| || || ||||||||||||||| ||||| ||||| |||||||||||||    
T  28715384 cgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagc 28715301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 30866154 - 30866201
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  30866154 acatataattacattgaattatgtgattttctcaaattattagcggtg 30866201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 31384978 - 31384927
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||| || ||||||||||||||| ||||||||||| ||||||||||||    
T  31384978 gacactgacacttgtaattacactgaattatgtgattttttcaaattattag 31384927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 24645592 - 24645486
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtga-ttttctcaaat 233  Q
    ||||||||||| || ||||| |||||||   |||| ||||||||| |||||||||||| || || ||||| || |||||| ||||||| |||| ||||||    
T  24645592 cacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttttttcaaat 24645493  T
Q  234 tattagc 240  Q
    |||||||    
T  24645492 tattagc 24645486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 31579240 - 31579282
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  31579240 taattacactgaattatgtgattttctcaaattattaacggtg 31579282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 32511681 - 32511723
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  32511681 taattacactgaattatgtgattttcttaaattattagcggtg 32511723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 17841541 - 17841642
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||| | |||| |||||| || |||||| ||||| |  || |||||||||||| || ||||||||||| |||||||||||    
T  17841541 gacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaaattatta 17841640  T
Q  239 gc 240  Q
    ||    
T  17841641 gc 17841642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 9027236 - 9027180
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtg 9027180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 9629441 - 9629385
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| |||||||| |||| |||||||||||||||||||||| ||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattattggcggtg 9629385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 12696382 - 12696330
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || ||||||||||||||| ||||| ||||| |||||||||||||    
T  12696382 gacactgacacttgtaattacactgaattatgtaattttttcaaattattagc 12696330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 13851802 - 13851738
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| ||||  || |||| ||||||||||||| || || |||||||||||||||||||||||    
T  13851802 gcgtgtcagacatcgacacatataattacactgaattacgttattttctcaaattattagcggtg 13851738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 16766743 - 16766703
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  16766743 tgtaattacactgaattatgtgattttttcaaattattagc 16766703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 1532289 - 1532242
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  1532289 acatataattacactgaattatgtaattttatcaaattattagcggtg 1532242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 7086844 - 7086801
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| |||||||||| || |||||||||||||||||||||||||    
T  7086844 acatataattacactaaattatgtgattttctcaaattattagc 7086801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 9617492 - 9617437
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||| || |||| |||||||| |||| ||||||||||||||||||||||| ||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 10294165 - 10294110
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||| || |||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  10294165 gacaccgacacatataattacattgaaatatgcgattatctcaaattattagcggt 10294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 10770687 - 10770726
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  10770687 tgtaattacactgaattatgtgattttttcaaattattag 10770726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 26562738 - 26562695
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||    
T  26562738 acatataattacactgaattatgtgattttctcaaatttttagc 26562695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 34073362 - 34073401
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcg 241  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  34073362 taattacactgaattatgagattttctcaaattattagcg 34073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 5462730 - 5462688
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||| ||||||||||||||||||||||| |||||    
T  5462730 taattacaatgaattatgtgattttctcaaattattaacggtg 5462688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 5970121 - 5970159
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  5970121 tgtaattacactgaattatgtgattttttcaaattatta 5970159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 7977825 - 7977883
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| ||||| || || ||||||||||||||| ||||| ||||| |||||||||||||    
T  7977825 gtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagc 7977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 7996393 - 7996431
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  7996393 taattacactgaattatatgattttctcaaattattagc 7996431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 8022408 - 8022370
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  8022408 taattacactgaattatatgattttctcaaattattagc 8022370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 8805587 - 8805625
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| || |||||||||||||||||||||||||    
T  8805587 taattacactaaattatgtgattttctcaaattattagc 8805625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 17341679 - 17341721
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||    
T  17341679 taattacactgaattatgtgattttatcaaattattaacggtg 17341721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 21924930 - 21924988
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| ||||| || |||| ||||||||||||| ||| |||| ||||||||||||||||    
T  21924930 gtgtccgacaccgacacatataattacactgaattatttgatattctcaaattattagc 21924988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 32978851 - 32978953
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtg-attttctcaaattatt 237  Q
    |||||||||  ||||| ||||||||| |||| ||||| ||| |||||| ||||| || || |||||||||||| || ||||||  |||| ||||||||||    
T  32978851 gacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacacttaattatgtgttttttttcaaattatt 32978950  T
Q  238 agc 240  Q
    |||    
T  32978951 agc 32978953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 6665257 - 6665216
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||| ||||| |||||||||| |||||||||||||||||    
T  6665257 taattactctgaattatgtgatttactcaaattattagcggt 6665216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 11591880 - 11591917
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaatt 234  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  11591880 acatataattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 20370476 - 20370533
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| || | ||  |||| |||||||||| |||||||||||||||||||    
T  20370476 tgtctgacactgacacttatacctacattgaaatatgtaattttctcaaattattagc 20370533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 25096470 - 25096425
Alignment:
Q  199 atgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||  | |||||||||||||||||||||||| ||||    
T  25096470 atgtaattacactagattatgtgattttctcaaattattagtggtg 25096425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 7569183 - 7569219
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  7569183 taattacactgaattatgtaattttctcaaattatta 7569219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 9107383 - 9107423
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| | ||||||||| |||||||||||||    
T  9107383 tgtaattacactgaattttgtgattttttcaaattattagc 9107423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 10842574 - 10842534
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  10842574 attacactaaattatgtgattttttcaaattattagcggtg 10842534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 10888975 - 10889031
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| | |||| |||| ||||| || ||||||||||| |||||||||||||||||    
T  10888975 gacactaacacatataatcacactaaattatgtgattttatcaaattattagcggtg 10889031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 19044523 - 19044471
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| || |||| |||| |||||||| |||||||| |||||||||||||||    
T  19044523 tgacaccgacacatataataacactgaattatgtgatattctcaaattattag 19044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 20371139 - 20371167
Alignment:
Q  216 tatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||||||||||||||||||    
T  20371139 tatgtgattttctcaaattattagcggtg 20371167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 21395321 - 21395364
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  21395321 tgtaattacactaaattatgt-attttctcaaattattagcggtg 21395364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 25038084 - 25038128
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| || ||||| ||||||||||||||||| |||||    
T  25038084 tgtaattacactaaattatgtaattttctcaaattattaacggtg 25038128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31959205 - 31959165
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  31959205 tgtaattacactgcattatgtgattttttcaaattattagc 31959165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 33001274 - 33001342
Alignment:
Q  173 gacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||||| ||||| || |||| |||||||| | || ||||||||||| |||||||||||||    
T  33001274 gacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagc 33001342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 49505147 - 49505210
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||| |||||||| |||| |||||||||| || ||||||||||||||||||||||||||||    
T  49505147 gcgtgtccgacactgacacatataattacactaaattatgtgattttctcaaattattagcggt 49505210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 34307795 - 34307837
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34307795 taattacactgaaatatgtgattttctcaaattattagcggtg 34307837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 10955056 - 10954959
Alignment:
Q  143 actcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||| |||||  |||||||| |||| ||||||||| |||||| ||||| || || ||| ||||||||||| ||||||||||| ||||||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattag 10954959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 7928516 - 7928452
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| ||||| || |||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  7928516 gcgtgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtg 7928452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 55401182 - 55401082
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||| | |||| ||||||||| |||||| ||||| || || |||||||||||| || ||||||||||| |||||||||||    
T  55401182 gacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattatta 55401083  T
Q  239 g 239  Q
    |    
T  55401082 g 55401082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 11252087 - 11251984
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaatt 234  Q
    |||||||||||||| |||||  ||||| ||  ||  |||||||||  ||||||||||| || ||||  |||||||||||| |||||||||||||||||||    
T  11252087 cacagacactcctcggattaggcgtgttccgatgccggacacgtgttgtgtctgacaccgacacat--aattacactgaattatgtgattttctcaaatt 11251990  T
Q  235 attagc 240  Q
    ||||||    
T  11251989 attagc 11251984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 40993287 - 40993393
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtga-ttttctcaaattatt 237  Q
    |||||||||| |||||  |||||||| |||| ||||| ||| |||||| ||||| || |||| ||||||||||||| ||||||| |||| | ||||||||    
T  40993287 gacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgattttttttaaattatt 40993386  T
Q  238 agcggtg 244  Q
    |||||||    
T  40993387 agcggtg 40993393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 10268481 - 10268537
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||||||| || |||||||||||| || ||||||||||| |||||||||||    
T  10268481 gtgtctgacactgacacttgtaattacactaaattatgtgattttttcaaattatta 10268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 28918110 - 28918007
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtct--gacactgaaacatgtaattacactgaaatatgtgattttctcaaattat 236  Q
    |||||||||  |||||  |||||||| |||| ||||||||| ||||||   ||||| || || ||||||||||||||| ||||||||||| |||||||||    
T  28918110 gacactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaaattat 28918011  T
Q  237 tagc 240  Q
    ||||    
T  28918010 tagc 28918007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 8383322 - 8383259
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || || | ||||||||||||| ||| |||||||||||||||||||||||||    
T  8383322 cgtgtccgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtg 8383259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 10690277 - 10690319
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  10690277 taattacactgaattatgtgattttctcagattattagcggtg 10690319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 4987304 - 4987344
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  4987304 tgtaattacactgaattatgtgattttttcaaattattagc 4987344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 4990980 - 4991024
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||    
T  4990980 tgtaattacactgaattatgtaattttctcaaactattagcggtg 4991024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 8039836 - 8039892
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||||||| ||| | |||||||||||||||||||||||    
T  8039836 gacaccgacacatataattacactgaattatataattttctcaaattattagcggtg 8039892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 11313801 - 11313853
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||| | |||| |||||||||| || |||||||||||||||||||||||||    
T  11313801 gacactaacacatataattacactaaattatgtgattttctcaaattattagc 11313853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 20691383 - 20691327
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||| || |||| | ||||||||||| ||||| |||||||||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 26508156 - 26508116
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  26508156 tgtaattacactgaattatgtgattttttcaaattattagc 26508116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 8789544 - 8789599
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattat 236  Q
    |||||| ||||| || |||| ||||||||| ||| |||||||||||||||||||||    
T  8789544 cgtgtccgacaccgacacatataattacacggaattatgtgattttctcaaattat 8789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 12704056 - 12704009
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| |||||| ||||||||||||||||| ||||    
T  12704056 acatataattacactgaattatgtgcttttctcaaattattagtggtg 12704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 14209171 - 14209120
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||| || ||||||||||||||| ||||||||||| | ||||||||||    
T  14209171 gacactgacacttgtaattacactgaattatgtgattttttaaaattattag 14209120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 16192760 - 16192807
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| |||||    
T  16192760 acatataattacactgaattatgttattttctcaaattattaacggtg 16192807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 32804550 - 32804597
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| |||||||||| || ||||||||||||||||||||||| |||||    
T  32804550 acatataattacactaaattatgtgattttctcaaattattaacggtg 32804597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 34910363 - 34910324
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  34910363 tgtaattacactgaattatgtgattttttcaaattattag 34910324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 45451618 - 45451559
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||| ||||| || |||| | |||| |||||| |||||||||||||||||||||||||    
T  45451618 cgtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattattagc 45451559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 5407262 - 5407304
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||| ||||||||||||||||||| |||||||||    
T  5407262 taattacaatgaattatgtgattttctcaaatttttagcggtg 5407304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 9624685 - 9624647
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  9624685 taattacattgaattatgtgattttctcaaattattagc 9624647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 11493376 - 11493418
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  11493376 taattacactgaattatgtgattttctcacattattagtggtg 11493418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 20503572 - 20503474
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatt 237  Q
    |||||||||| |||||  |||||||| ||||  |||| ||| ||||||  |||| || || ||||||||||||||| ||||| ||||| ||||||||||    
T  20503572 gacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 25775613 - 25775516
Alignment:
Q  141 acactcctccgattaaacgtgtccctgtgttggacacgtgcgtgtctgacactgaaacatgtaattacactgaaatatgtgatt-ttctcaaattatta 238  Q
    ||||||||| |||||  |||||||  |||| |||||||  |||||| ||||| || || ||||||||||||||| ||||||||| || |||||||||||    
T  25775613 acactcctcggattaggcgtgtcctggtgtcggacacga-cgtgtccgacaccgacacttgtaattacactgaattatgtgattattttcaaattatta 25775516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 25948902 - 25948940
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  25948902 taattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 26290429 - 26290379
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||| |||| |||||| || ||| |||||||||||||||||||||||    
T  26290429 gacactgacacatataattaaaccgaactatgtgattttctcaaattatta 26290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 27277853 - 27277891
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| || |||||||||||||||||||||||||    
T  27277853 taattacactaaattatgtgattttctcaaattattagc 27277891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 34189469 - 34189435
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||||||| |||||||||||||||||    
T  34189469 attacactgaaatatgtcattttctcaaattatta 34189435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 51206348 - 51206406
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| ||||| || || |||| |||||||||| ||||||||||| |||||||||||||    
T  51206348 gtgtccgacaccgacacttgtatttacactgaattatgtgattttttcaaattattagc 51206406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14979224 - 14979187
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  14979224 aattacactgaattatgtgattttttcaaattattagc 14979187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 35223045 - 35222956
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttct 228  Q
    |||||||||| ||| || |||||||| ||||  |||||||| | |||| ||||| || |||| |||||||| |||| |||||||||||||    
T  35223045 gacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgattttct 35222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 1438853 - 1438809
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||    
T  1438853 acatataattatactgaattatgtgattttctcaaattgttagcg 1438809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 1509585 - 1509545
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  1509585 tgtaattacactaaattatgtgattttttcaaattattagc 1509545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 1550198 - 1550142
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| || | |||||||||||||   ||||||||| |||||||||||||||||    
T  1550198 gacactgacacctataattacactgaatagtgtgattttttcaaattattagcggtg 1550142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 11610567 - 11610523
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||    
T  11610567 tgtaactacactgaattatgtgatttttttaaattattagcggtg 11610523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 14832157 - 14832105
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || |||||||||| |||  ||||||||||| |||||||||||||    
T  14832157 gacactgacacttgtaattacattgagttatgtgattttttcaaattattagc 14832105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 14840306 - 14840342
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  14840306 taattacactgaattatgtgattttctgaaattatta 14840342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 15812836 - 15812876
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcgg 242  Q
    ||||||||||||  |||||||||||||||||||||| ||||    
T  15812836 taattacactgagttatgtgattttctcaaattatttgcgg 15812876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 21211332 - 21211296
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  21211332 taattacactgaactatgtaattttctcaaattatta 21211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 21256999 - 21257039
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| |||||| ||||||||||| |||||||||||||    
T  21256999 tgtaattatactgaattatgtgattttttcaaattattagc 21257039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 25093566 - 25093510
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||| ||||| || |||| ||||||||||||| | |||||||||||||||| ||||    
T  25093566 gtgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcatta 25093510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 35994751 - 35994790
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  35994751 tgtaattacactgaattatgtgatttt-tcaaattattagc 35994790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 49651799 - 49651839
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| |||| ||||||||||| |||||||||||||    
T  49651799 tgtaattacagtgaattatgtgattttttcaaattattagc 49651839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 21191008 - 21191109
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| | || |||||||||  ||||| ||||| || || ||||||||||||||| ||||||||||| |||||||||||    
T  21191008 gacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 21191107  T
Q  239 gc 240  Q
    ||    
T  21191108 gc 21191109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 21576697 - 21576798
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| ||||  |||||||| |||||| ||||  || || ||||||||||||||| ||||||||||| |||||||||||    
T  21576697 gacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgattttttcaaattatta 21576796  T
Q  239 gc 240  Q
    ||    
T  21576797 gc 21576798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 30502360 - 30502445
Alignment:
Q  160 tgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| |||| ||||| ||| |||||| ||||| || |||| ||||||||||||| || ||||||||||||||||||||||||||    
T  30502360 tgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtg 30502445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 30542703 - 30542788
Alignment:
Q  160 tgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| |||| ||||| ||| |||||| ||||| || |||| ||||||||||||| || ||||||||||||||||||||||||||    
T  30542703 tgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtg 30542788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 42893467 - 42893366
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||  ||||  |||||||  |||| |||||||||  ||||||||||| || || ||||||||||||| | ||||||||||| |||||||||||    
T  42893467 gacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatgtgattttttcaaattatta 42893368  T
Q  239 gc 240  Q
    ||    
T  42893367 gc 42893366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 3966561 - 3966505
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||||||| | |||||||||||||||||||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtg 3966505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 17593675 - 17593778
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtgcgtgtctgac-actgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||| |||||||| ||||||||||||||| || |  || ||  | | || ||||||||||||| || ||||||||||||||||||||    
T  17593675 gacactcctcggattaagcgtgtcccggtgttggacacgtgc-tgacacaccaccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T
Q  239 gcggt 243  Q
    |||||    
T  17593774 gcggt 17593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27932281 - 27932237
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  27932281 tgtaattacactgaattatgtaattttctcaaattattagcggtg 27932237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 39698599 - 39698547
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||||||||    
T  39698599 gacactgacacttgtaattacactgaattatgtgattttttcaaattattagc 39698547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 6471899 - 6471942
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  6471899 acatataattacactgaattatgtgattttctcaaattattagc 6471942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 12927734 - 12927659
Alignment:
Q  167 gtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    |||||| ||||||| | ||||||||||||| | || |||||||||| || ||| ||||||||||||||||||||||    
T  12927734 gtgttgaacacgtgtcatgtctgacactgacatatataattacactaaattatatgattttctcaaattattagcg 12927659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 28588668 - 28588731
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||| ||||| || || | ||||||||||||| ||||||||||||||||||||||| |||||    
T  28588668 cgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtg 28588731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 6247687 - 6247629
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| ||||| || || ||||||||||||||| ||||||||||| ||||||||||||    
T  6247687 cgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 6247629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 36838601 - 36838545
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| |||||||||| || ||||| |||||||||||||||||||||||    
T  36838601 gacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtg 36838545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 6326292 - 6326351
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcg 241  Q
    ||||| ||| |||| || ||||||||||||||| ||||| |||||||||||||| |||||    
T  6326292 gtgtccgacgctgacacttgtaattacactgaattatgtaattttctcaaattactagcg 6326351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 27144512 - 27144465
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| |||||||||| || |||||||||| ||||||||||||||||||    
T  27144512 acatataattacactaaattatgtgatttcctcaaattattagcggtg 27144465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 41091267 - 41091310
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||    
T  41091267 acatataattacactgaattatgtgattttctcaaatcattagc 41091310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 19438386 - 19438348
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagcg 241  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  19438386 aattacactgaattatgtgattttctcaaattatcagcg 19438348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 24273040 - 24273078
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaatta 235  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  24273040 acatataattacactgaattatgtgattttctcaaatta 24273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 24389174 - 24389136
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaatta 235  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  24389174 acatataattacactgaattatgtgattttctcaaatta 24389136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 26312834 - 26312772
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    |||||| ||||| || |||| ||||||||||||| ||  |||||||||||||||||| |||||    
T  26312834 cgtgtccgacaccgatacatataattacactgaattaattgattttctcaaattatttgcggt 26312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 5467993 - 5468034
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||    
T  5467993 taattacactgaattatgtgattttatcaaattattatcggt 5468034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 12264829 - 12264886
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| ||| |||| |||||||||||||  |||| |||||||||||| ||||||||||    
T  12264829 tgacattgacacatataattacactgaatcatgtaattttctcaaataattagcggtg 12264886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 16203791 - 16203848
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||| ||||| || |||| |||||||||| || |||| ||||||||||||||||||||    
T  16203791 tgtccgacaccgacacatataattacactaaattatgagattttctcaaattattagc 16203848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 30098370 - 30098329
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    |||||||| |||| ||||||||||||||||||||||| ||||    
T  30098370 taattacattgaattatgtgattttctcaaattattaacggt 30098329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 32630719 - 32630792
Alignment:
Q  172 ggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||| ||| || |||||||| |||| |||||||| |||| ||| | ||||||||||||||||| |||||    
T  32630719 ggacacgtgtcgtatccgacactgacacatataattacattgaattatataattttctcaaattattatcggtg 32630792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 35017081 - 35017044
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||||| || ||||||||||||||||||||||||    
T  35017081 taattacactaaattatgtgattttctcaaattattag 35017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 11685997 - 11685941
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| |||||||||| || |||| || |||||||||||||||||||||    
T  11685997 gacaccgacacatataattacactaaattatgcgactttctcaaattattagcggtg 11685941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 14674315 - 14674275
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  14674315 tgtaattacactaaattatgtgattttttcaaattattagc 14674275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 17123078 - 17123050
Alignment:
Q  216 tatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||||||||||||||||||    
T  17123078 tatgtgattttctcaaattattagcggtg 17123050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 19579747 - 19579707
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| |||| || |||||||||||||||||||||||||    
T  19579747 tgtaattgcactaaattatgtgattttctcaaattattagc 19579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 23016004 - 23016040
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  23016004 taattacactgaattatgtgattttctcaaatgatta 23016040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31084369 - 31084329
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||||| |||| ||||||||||| |||||||||||||    
T  31084369 tgtaattacattgaattatgtgattttttcaaattattagc 31084329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 34879392 - 34879352
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||| ||||||||||||||| |||||||||    
T  34879392 attacactgaattatatgattttctcaaatttttagcggtg 34879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 43001846 - 43001806
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||| ||||| |||||||||||||    
T  43001846 tgtaattacactgaattatgtaattttttcaaattattagc 43001806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 2438671 - 2438772
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||  |||||||| |||| ||||| ||| |||||| ||||| || || ||||||||||||||| ||||||||||| | |||||||||    
T  2438671 gacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttgaaattatta 2438770  T
Q  239 gc 240  Q
    ||    
T  2438771 gc 2438772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 21091786 - 21091725
Alignment:
Q  183 tgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  21091786 tgtctgacactgacacttgtaattacactgaagtatgttattttcttaaattattagcggtg 21091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 21616811 - 21616764
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  21616811 acatataattacactgaattatgtgattttctcaaattattagcggtg 21616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 28678022 - 28677911
Alignment:
Q  139 agacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactga-----aacatgtaattacactgaaatatgtgattttctcaaa 232  Q
    ||||||||||||| | |  ||||||||||||| |||||| || ||||| |||||| ||     ||||| ||||||||||||| ||||||||||| |||||    
T  28678022 agacactcctccggtcagccgtgtccctgtgtcggacacttgtcgtgtttgacaccgacaccgaacatataattacactgaattatgtgattttttcaaa 28677923  T
Q  233 ttattagcggtg 244  Q
    ||||||||||||    
T  28677922 ttattagcggtg 28677911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 42832291 - 42832333
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  42832291 taattacactgaaatatgtaattttctcaaattattagcggtg 42832333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 37411192 - 37411301
Alignment:
Q  136 cacagacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaatt 234  Q
    ||||| |||||||| || ||  |||||||| |||| ||||||| | |||||  ||||  || |||| |||| |||||||| |||||||||||||||||||    
T  37411192 cacaggcactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaatt 37411291  T
Q  235 attagcggtg 244  Q
    ||||||||||    
T  37411292 attagcggtg 37411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 18840965 - 18841065
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||   ||||||| |||| ||||| ||| |||||||||||| || || |||||||||||| || ||||| ||||| |||||||||||    
T  18840965 gacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattatta 18841064  T
Q  239 g 239  Q
    |    
T  18841065 g 18841065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 44860378 - 44860322
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || |||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtg 44860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 18276582 - 18276523
Alignment:
Q  185 tctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| || |||  ||||||||||||| || ||||||||||||||||||||||||||    
T  18276582 tctgacaccgacacacataattacactgaattaagtgattttctcaaattattagcggtg 18276523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 23718075 - 23718028
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  23718075 acatataattacactgaattatgtgactttctcaaattattagcggtg 23718028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 24105747 - 24105700
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  24105747 acatataattacactgaattatgtgactttctcaaattattagcggtg 24105700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 31808134 - 31808079
Alignment:
Q  189 acactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||| ||||||||||||| ||||||||||| | |||||||||||||||    
T  31808134 acactgacacatataattacactgaattatgtgattttgttaaattattagcggtg 31808079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 34691798 - 34691861
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||| ||||| || |||| ||||||||||||| ||| ||||||| ||||||||||||||||    
T  34691798 gcgtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattagcggt 34691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 34714210 - 34714273
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||| ||||| || |||| ||||||||||||| ||| ||||||| ||||||||||||||||    
T  34714210 gcgtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattagcggt 34714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 5367257 - 5367199
Alignment:
Q  181 cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||| ||||| || |||| ||||||||||||| |||||||||| |||||||||||||    
T  5367257 cgtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattattag 5367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 21782833 - 21782871
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  21782833 taattacactgaattatgtgattttctcaaattattagc 21782871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 37559084 - 37558983
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||| ||||| || |||| ||||||||| |  ||| ||||| || || |||||||||| |||| |||||||||||  ||||||||||    
T  37559084 gacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttttacaaattatta 37558985  T
Q  239 gc 240  Q
    ||    
T  37558984 gc 37558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 38117111 - 38117212
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtgc-gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||| |||| |||||  |||||||| |||| |||||||||  ||||| |||||  | || ||||||||||| ||| ||||||||||| |||||||||||    
T  38117111 gacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacaccgaagtatgtgattttttcaaattatta 38117210  T
Q  239 gc 240  Q
    ||    
T  38117211 gc 38117212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 29970566 - 29970606
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  29970566 attacactgaactatgcgattttctcaaattattagcggtg 29970606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 30717543 - 30717583
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  30717543 tgtaattacactgaattatgtgattttttcaaattattagc 30717583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 39323310 - 39323266
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  39323310 tgtaattacactgaattatgtaattttgtcaaattattagcggtg 39323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 18889608 - 18889646
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcgg 242  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  18889608 attacactgaattatgtgattttctcaatttattagcgg 18889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 25846785 - 25846743
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||||  ||||||||||||||||||||||| ||||    
T  25846785 taattacactgaatcatgtgattttctcaaattattagtggtg 25846743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 28412394 - 28412352
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||    
T  28412394 taattacactgaattatgtgattttatcaaattattaacggtg 28412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30404863 - 30404901
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  30404863 tgtaattacactgaattatgtgattttttcaaattatta 30404901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 35449567 - 35449521
Alignment:
Q  192 ctgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| |||| ||||||||||||| | |||||||||||||||||||||    
T  35449567 ctgacacatataattacactgaattctgtgattttctcaaattatta 35449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 44605136 - 44605190
Alignment:
Q  184 gtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| |||| || ||||||||||||| |||| ||||| |||||||||||||||||    
T  44605136 gtctaacaccgacacatgtaattacattgaattatgttattttctcaaattatta 44605190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 22084848 - 22084889
Alignment:
Q  203 aattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  22084848 aattacactgaattatatgattttctcaaattattaacggtg 22084889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 23921297 - 23921256
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||    
T  23921297 taattacactgaattatgtaattttctcaaattattaacggt 23921256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 36281737 - 36281688
Alignment:
Q  194 gaaacatgtaattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||| | |||||||| || ||||||||||||||||||||||| ||||    
T  36281737 gaaacatatgattacactaaattatgtgattttctcaaattattaacggt 36281688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 896253 - 896217
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||| |||||||||||||||||||||| |||||||    
T  896253 attacattgaaatatgtgattttctcaaactattagc 896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 2331834 - 2331802
Alignment:
Q  206 tacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||| |||||||||||||||||||||||    
T  2331834 tacactgaattatgtgattttctcaaattatta 2331802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 10535776 - 10535816
Alignment:
Q  204 attacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  10535776 attacactgaattatgtcattttctcaaattattatcggtg 10535816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 15972961 - 15972881
Alignment:
Q  159 gtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||| | || ||||||||| |||||| ||||| || || ||||||||||||||| | ||| ||||| |||||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaaattatta 15972881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 18571030 - 18570974
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||||||| |||| | |||||| |||| ||||| ||||||||||||||||| |||||    
T  18571030 gacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtg 18570974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 19536390 - 19536450
Alignment:
Q  180 gcgtgtctgacactgaaacatgtaattacactgaaatatgtga-ttttctcaaattattag 239  Q
    ||||||| ||||| || || ||||||||||||||| ||||||| |||| ||||||||||||    
T  19536390 gcgtgtccgacaccgacacttgtaattacactgaattatgtgatttttttcaaattattag 19536450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 21374712 - 21374752
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||| ||||| |||||||||||||    
T  21374712 tgtaattacactgaattatgtaattttttcaaattattagc 21374752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 63837 - 63775
Alignment:
Q  182 gtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| || || ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  63837 gtgtctgacaccgacacttgtaattgcactgaattatgtaattttctcaaattattagcggtg 63775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 414 - 515
Alignment:
Q  140 gacactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||||| |||||   ||||||| |||| ||||||| | |||||| ||||| || || ||||||||||||||| | ||||||||| |||||||||||    
T  414 gacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaattatta 513  T
Q  239 gc 240  Q
    ||    
T  514 gc 515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 92862 - 92809
Alignment:
Q  191 actgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||| || ||||||||||||||| ||||| |||||||||||||||||||||||    
T  92862 actgacacttgtaattacactgaattatgtaattttctcaaattattagcggtg 92809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 20230 - 20178
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || ||||||||||||||| ||||||||||| |||||||||||||    
T  20230 gacactgacacttgtaattacactgaattatgtgattttttcaaattattagc 20178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 44535 - 44582
Alignment:
Q  197 acatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  44535 acatataattacactgaattatgtgattttctcaaatttttagcggtg 44582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 14633 - 14537
Alignment:
Q  141 acactcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    |||||||| ||||||  |||||| | |||| ||||||||| |||||| |||||    || ||||||||||||||| ||||||||||| ||||||||||||    
T  14633 acactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacacc---acttgtaattacactgaattatgtgattttttcaaattattag 14537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 53224 - 53183
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattattagcggt 243  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  53224 taattacactgaattatgtgattttctcaaattattggcggt 53183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 51857 - 51817
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  51857 tgtaattacactgaattatgtgattttttcaaattattagc 51817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 135313 - 135365
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||| || |||| ||||||||| ||| |||||||||||||||||||||||||    
T  135313 gacaccgacacatataattacacagaattatgtgattttctcaaattattagc 135365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 263373 - 263425
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    |||||||| || | ||||||||||||| |||||| ||||||||||||||||||    
T  263373 gacactgacacttataattacactgaattatgtggttttctcaaattattagc 263425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 1092 - 1037
Alignment:
Q  189 acactgaaacatgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||| |||| || |||||||||| ||||| ||||| |||||||||||||||||    
T  1092 acactgacacatatagttacactgaattatgtaattttttcaaattattagcggtg 1037  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 13446 - 13407
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  13446 tgtaattgcactgaattatgtgattttctcaaattattag 13407  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 21881 - 21920
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  21881 tgtaattgcactgaattatgtgattttctcaaattattag 21920  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 9748 - 9799
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattattag 239  Q
    ||||| || |||| ||||||||||||| || |||||||||||||||||||||    
T  9748 gacaccgacacatataattacactgaattaagtgattttctcaaattattag 9799  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 3850 - 3900
Alignment:
Q  188 gacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||||||| || ||||||||||||||| ||||||||||| | |||||||||    
T  3850 gacactgacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 8902 - 8804
Alignment:
Q  143 actcctccgattaaacgtgtccctgtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||| |||||  |||||| | |||| ||||||||| |||||| ||||| || || |||||||||||| ||  || ||||||| |||||||||||||    
T  8902 actcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattattagc 8804  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 46728 - 46690
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  46728 tgtaattacactgaattatgtgattttttcaaattatta 46690  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 178818 - 178871
Alignment:
Q  187 tgacactgaaacatgtaattacactgaaatatg-tgattttctcaaattattag 239  Q
    ||||||||| || ||||||||||||||| |||| ||||||| ||||||||||||    
T  178818 tgacactgacacttgtaattacactgaattatgatgattttttcaaattattag 178871  T

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Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 192262 - 192306
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagcggtg 244  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |||||    
T  192262 tgtaattacaccgaattatgtaattttctcaaattattaacggtg 192306  T

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Target: scaffold0066 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 33376 - 33416
Alignment:
Q  200 tgtaattacactgaaatatgtgattttctcaaattattagc 240  Q
    ||||||||||||||| ||||| ||||| |||||||||||||    
T  33376 tgtaattacactgaattatgttattttttcaaattattagc 33416  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 70358 - 70286
Alignment:
Q  167 gtgttggacacgtg-cgtgtctgacactgaaacatgtaattacactgaaatatgtgattttctcaaattatta 238  Q
    |||| ||||||||| |||||| ||||| || || | ||||||||||||| ||||| ||||| |||||||||||    
T  70358 gtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattatta 70286  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 90887 - 90851
Alignment:
Q  202 taattacactgaaatatgtgattttctcaaattatta 238  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  90887 taattacactgaattatatgattttctcaaattatta 90851  T

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