View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8146_low_1 (Length: 555)

Name: NF8146_low_1
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8146_low_1
NF8146_low_1
[»] chr2 (12 HSPs)
chr2 (273-555)||(32534407-32534688)
chr2 (14-280)||(32534714-32534980)
chr2 (273-476)||(32111879-32112082)
chr2 (278-476)||(32119922-32120120)
chr2 (295-476)||(32205096-32205274)
chr2 (319-476)||(32175565-32175722)
chr2 (295-476)||(32159285-32159463)
chr2 (273-470)||(32178706-32178900)
chr2 (273-375)||(32183672-32183771)
chr2 (327-476)||(32210857-32210995)
chr2 (387-476)||(32183586-32183675)
chr2 (141-280)||(32112108-32112246)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 273 - 555
Target Start/End: Complemental strand, 32534688 - 32534407
Alignment:
Q  273 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  32534688 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtagcctcaattgtgctaatgtaaaccatcacgaa 32534589  T
Q  373 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 472  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534588 tgaactcattccccatgagctcctaaactttgttcaatcgg-acttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 32534490  T
Q  473 caagatgcttttccctttggatctctcacctgtgtaggaaaataataagagctcgaggcaacttattcttggcatgtccaacc 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32534489 caagatgcttttccctttggatctctcacctgtgtaggaaaataataagagctcgaggaaacttattcttggcatgtccaacc 32534407  T

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Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 32534980 - 32534714
Alignment:
Q  14 attttaacctctttgataatattttggagaaagatctacaaatttgatagagatgaagagttaaaatctgatatgaacttagtccaaacaaacttggagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32534980 attttaacctctttgataatattttggagaaagatctacaaatttgatagagatgaagagttaaaatctgatatgaacttagtgcaaacaaacttagagt 32534881  T
Q  114 aagagaaagagatgtcattacaatagaaagaaaagcatcttgaaatcatgatctcatgcaagaactcaacaaaattatatttttgaatactttctttcat 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534880 aagagaaagagacgtcattacaatagaaagaaaagcatcttgaaatcatgatctcatgcaagaactcaacaaaattatatttttgaatactttctttcat 32534781  T
Q  214 atctttctataggatttgaattgacggcgttaaataatttttccggtccatagcagtcatctgatct 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534780 atctttctataggatttgaattgacggcgttaaataatttttccggtccatagcagtcatctgatct 32534714  T

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Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 273 - 476
Target Start/End: Complemental strand, 32112082 - 32111879
Alignment:
Q  273 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 372  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||  |||||||    
T  32112082 tctgatcttcatcaatgacagtgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattgcgctaatgcgaactgtcacgaa 32111983  T
Q  373 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 472  Q
    |||||||||||| | |||  |||||||||||||||||||||||||||||||| ||| |||| |||||   || ||||||||||||||| |||||||||||    
T  32111982 tgaactcattcctcgtgaagtcctaaactttgttcaatcgggacttcaccatgtttttcgccaattcaacgcacaattcaccatagtcattgaagaattt 32111883  T
Q  473 caag 476  Q
    ||||    
T  32111882 caag 32111879  T

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Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 476
Target Start/End: Complemental strand, 32120120 - 32119922
Alignment:
Q  278 tcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaac 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||  |||  || |||||||||    
T  32120120 tcttcatcaacgacaatgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattatgctaatgcaaacggtcgcgaatgaac 32120021  T
Q  378 tcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    ||||||| | ||| |||||||||||||||||||||||||||  |||||||| | || ||| | |  | | ||||||| |||||||||||||||||||||    
T  32120020 tcattcctcgtgaactcctaaactttgttcaatcgggacttagccatcttttttgccaatcccccacacgattcaccgtagtcgttgaagaatttcaag 32119922  T

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Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 295 - 476
Target Start/End: Original strand, 32205096 - 32205274
Alignment:
Q  295 gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctc 394  Q
    |||| ||||||||||||||||||   || |||||||||| ||| ||||||| ||||||||| || ||| |||||| |||||| ||||||| |||||  ||    
T  32205096 gatcgcaacaatgtttgatagca---agacacttttatcggcaatggcctctattgtgctagtgcgaaacatcacaaatgaagtcattcctcatgaaatc 32205192  T
Q  395 ctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||  |||||||||||||||    
T  32205193 ctaaactttgtacaatcgggacttcaccatttttgtcgccaattctcagcgcaatttaccatagttattgaagaatttcaag 32205274  T

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Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 319 - 476
Target Start/End: Complemental strand, 32175722 - 32175565
Alignment:
Q  319 caagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctcctaaactttgttcaatcgggactt 418  Q
    |||||||||| | |||||| |||||||||||||||||||| |||||||||| ||||| || ||||| |||||||||||| || || ||||| | ||||||    
T  32175722 caagccacttgtgtctgcaatggcctcaattgtgctaatgcgaaccatcacaaatgagcttattcctcatgagctcctacacatttttcaagctggactt 32175623  T
Q  419 caccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    |||||||||| |||| ||| ||| || |||||||||||| || |||||||||||||||    
T  32175622 caccatctttttcgccaatcctccgcacaattcaccataatcattgaagaatttcaag 32175565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 295 - 476
Target Start/End: Complemental strand, 32159463 - 32159285
Alignment:
Q  295 gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctc 394  Q
    ||||||||||||||| |||| ||   |||||||| | |||||| |||||||||||||| | ||| |||||||||||||||| |||||||| |||||||||    
T  32159463 gatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattgtgttcatgcgaaccatcacgaatgagctcattcctcatgagctc 32159367  T
Q  395 ctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    ||| | ||| ||||| | ||| |||||||||||| |||| ||| ||| || |||||||||||| || |||||||||||||||    
T  32159366 ctacaattttttcaagctggaattcaccatctttttcgccaatcctccgcacaattcaccatactcattgaagaatttcaag 32159285  T

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Target: chr2; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 273 - 470
Target Start/End: Complemental strand, 32178900 - 32178706
Alignment:
Q  273 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 372  Q
    ||||||||||||||||||    ||||||||||||||| ||||  |   |||||||| | |||||| ||||||||||||| |||||  ||||||||| |||    
T  32178900 tctgatcttcatcaacgatcgagatctcaacaatgttcgatacga---agccacttgtgtctgcaatggcctcaattgtactaatacgaaccatcatgaa 32178804  T
Q  373 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaat 470  Q
    ||| |||||||| |||||||||||| ||||| ||||| | |||||| | ||||||| |||| ||| ||| |||||||||||||||||| |||||||||    
T  32178803 tgagctcattcctcatgagctcctacacttttttcaagctggacttgatcatctttttcgccaatcctccgcgcaattcaccatagtcattgaagaat 32178706  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 32183771 - 32183672
Alignment:
Q  273 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 372  Q
    ||||||||||||||| ||    ||||||||||||||| |||| ||   |||||||| | |||||| ||||||||||| |||||||| |||||||||||||    
T  32183771 tctgatcttcatcaatgatcgagatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattatgctaatgcgaaccatcacgaa 32183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 476
Target Start/End: Original strand, 32210857 - 32210995
Alignment:
Q  327 ttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatct 426  Q
    ||||||| ||| ||||||| ||||||||| || ||| ||||||||| ||| || |||| |||||| ||||||||||||| ||           ||||| |    
T  32210857 ttttatcggcaatggcctctattgtgctagtgcgaaacatcacgaaagaagtcgttcctcatgagatcctaaactttgtaca-----------accatgt 32210945  T
Q  427 ttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    || || | |||||||||||||||| ||||||||| |||||||||||||||    
T  32210946 ttttcaccaattctcagcgcaatttaccatagtcattgaagaatttcaag 32210995  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 476
Target Start/End: Complemental strand, 32183675 - 32183586
Alignment:
Q  387 atgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 476  Q
    ||||||||||| | ||| ||||| | |||||||||||||||| |||| ||| ||| || || ||||||||| || |||||||||||||||    
T  32183675 atgagctcctacaattttttcaagctggacttcaccatctttttcgccaatcctccgcacagttcaccataatcattgaagaatttcaag 32183586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 32112246 - 32112108
Alignment:
Q  141 aagaaaagcatcttgaaatcatgatctcatgcaagaactcaacaaaattatatttttg-aatactttc-tttcatatctttctataggatttgaattgac 238  Q
    ||||||| ||||||||||| ||  |||| ||||| | ||||||||||||||||||||  ||| ||||| |||||||| |||   |||||||  ||||| |    
T  32112246 aagaaaaacatcttgaaat-at--tctcttgcaaaatctcaacaaaattatatttttttaatgctttcctttcatattttttcgtaggattcaaattgcc 32112150  T
Q  239 ggcgttaaataatttttccggtccatagcagtcatctgatct 280  Q
    | | ||||||||  ||||| |||||||||||||| |||||||    
T  32112149 gtcattaaataacgtttccagtccatagcagtcagctgatct 32112108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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