View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8146_low_11 (Length: 257)

Name: NF8146_low_11
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8146_low_11
NF8146_low_11
[»] chr3 (11 HSPs)
chr3 (7-240)||(23433936-23434169)
chr3 (7-240)||(23497545-23497778)
chr3 (81-240)||(23445882-23446041)
chr3 (11-240)||(23477118-23477347)
chr3 (4-105)||(23382070-23382171)
chr3 (4-105)||(23403229-23403330)
chr3 (4-116)||(23470943-23471058)
chr3 (4-180)||(23350508-23350684)
chr3 (7-105)||(23438446-23438547)
chr3 (4-105)||(23461833-23461934)
chr3 (4-111)||(23452725-23452835)
[»] scaffold0201 (1 HSPs)
scaffold0201 (4-110)||(10005-10111)
[»] chr8 (1 HSPs)
chr8 (12-91)||(15043187-15043266)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 23433936 - 23434169
Alignment:
Q  7 cttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaatgc 106  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || || |||||||||| ||||||    
T  23433936 cttgatgcatgaattgaaatgataggttgcaatcattacttccaagtttttgtctgttgtaaggatgccaacatatcaaaacgtgatctgaaattaatgc 23434035  T
Q  107 cccaatataagagtaatcaaaaatatgacacctttcaacttctttgccgttttcaaagataacacaatgcagggggtgattgagaacatggaagccctta 206  Q
    ||||||||||| || || || || |  |||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||| |||     
T  23434036 cccaatataagcgtcatgaataacaaaacacctgtcaacttctttgccgtgttcaaagataacacaattcagggggagattgtgaacatggaagcacttc 23434135  T
Q  207 gaaataatggtgcagaatatgaaaccagacaggt 240  Q
    |||| |||||||||||||||||||||||||||||    
T  23434136 gaaacaatggtgcagaatatgaaaccagacaggt 23434169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 23497545 - 23497778
Alignment:
Q  7 cttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaatgc 106  Q
    ||||||| |||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||||| ||||| |||||||||| |||||     
T  23497545 cttgatgcatgaattgaaatgataggttgcaatcattacttccatgtttccgtctgttgtaaggatgccaacatatcaatacgtgatctgaaattaatgt 23497644  T
Q  107 cccaatataagagtaatcaaaaatatgacacctttcaacttctttgccgttttcaaagataacacaatgcagggggtgattgagaacatggaagccctta 206  Q
    |||| ||||   |||| ||| || |  |||| | || ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  23497645 cccattatattcgtaaacaacaagaatacacttgtcgacttctttgccgtgttcaaagatgacacaatgcagggggtgattgagatcatggaagccctta 23497744  T
Q  207 gaaataatggtgcagaatatgaaaccagacaggt 240  Q
    |||| |||||||||||||| ||||||||||||||    
T  23497745 gaaagaatggtgcagaatacgaaaccagacaggt 23497778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 23445882 - 23446041
Alignment:
Q  81 attaatacatgatctgaaactaatgccccaatataagagtaatcaaaaatatgacacctttcaacttctttgccgttttcaaagataacacaatgcaggg 180  Q
    ||||||||||||||||||| ||||| ||||||||||  | || ||||| ||  |||| |||||||||||||||||||||||||||| |||||||||||||    
T  23445882 attaatacatgatctgaaattaatgtcccaatataattgcaagcaaaagtaaaacacgtttcaacttctttgccgttttcaaagatgacacaatgcaggg 23445981  T
Q  181 ggtgattgagaacatggaagcccttagaaataatggtgcagaatatgaaaccagacaggt 240  Q
    ||||||||  || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23445982 ggtgattgcaaatatggaagcccttagaaagaatggtgcagaatatgaaaccagacaggt 23446041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 23477118 - 23477347
Alignment:
Q  11 atgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaatgcccca 110  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||| ||| ||||||  || ||||||||  |||||||||||||||| ||||  | ||    
T  23477118 atgtatgaattgaaatgatagtttacaatcattacttccaaatttttctcttttgtaacaataccaacataacaatacatgatctgaaattaatctcaca 23477217  T
Q  111 atataagagtaatcaaaaatatgacacctttcaacttctttgccgttttcaaagataacacaatgcagggggtgattgagaacatggaagcccttagaaa 210  Q
    ||||||  |  |  | |||||  |||||| || ||||||||||||| ||| ||||| | |||||||||||||||| |  ||| | ||||||||| |||||    
T  23477218 atataaagggcaaaacaaataatacacctgtcgacttctttgccgtgttctaagatgatacaatgcagggggtgactctgaaaaaggaagccctcagaaa 23477317  T
Q  211 taatggtgcagaatatgaaaccagacaggt 240  Q
     |||||||||||||||||||||||||||||    
T  23477318 gaatggtgcagaatatgaaaccagacaggt 23477347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 23382070 - 23382171
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaa 103  Q
    |||||||| |||||||||||||||||| ||| ||||||| |||||||  || |||| ||||||||  |||||| ||||| |||||||||||||||| |||    
T  23382070 gaccttgaagtatgaattgaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaccatatcaatacatgatctgaaattaa 23382169  T
Q  104 tg 105  Q
    ||    
T  23382170 tg 23382171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 23403229 - 23403330
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaa 103  Q
    |||||||| |||||||||||||||||| ||| ||||||| |||||||  || |||| ||||||||  ||||||||| || |||||||||||||||| |||    
T  23403229 gaccttgaagtatgaattgaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaacacatcaatacatgatctgaaattaa 23403328  T
Q  104 tg 105  Q
    ||    
T  23403329 tg 23403330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 23470943 - 23471058
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaa---tcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaac 100  Q
    |||||||| |||||||||||||||||| |||||||   |||| |||||||  || |||||||||||||  |||||||||||| ||| ||||||||||||     
T  23470943 gaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttcttgtctgttgtaaccatgccaacatatcaatgcatgatctgaaat 23471042  T
Q  101 taatgccccaatataa 116  Q
    ||||| ||||| ||||    
T  23471043 taatgtcccaaaataa 23471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 23350508 - 23350684
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaa---tcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaac 100  Q
    |||||||| |||| |||||||||||||||||||||   |||| |||||||  || |||  || ||||| ||||||||||||| ||||| |||||| |||     
T  23350508 gaccttgaagtataaattgaaatgataggttgcaaaagtcataacttccactttcttgaatgctgtaacgatgccaacatatcaatacgtgatctaaaat 23350607  T
Q  101 taatgccccaatataagagtaatcaaaaatatgacacctttcaacttctttgccgttttcaaagataacacaatgcaggg 180  Q
    ||||||||||| ||||  | |   |  |||| |||| || || ||||||||||| | |||||||||||||||||| ||||    
T  23350608 taatgccccaagataattgca---actaatacgacatctgtcgacttctttgccatgttcaaagataacacaatgaaggg 23350684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 23438446 - 23438547
Alignment:
Q  7 cttgatgtatgaattgaaatgataggttgcaa---tcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaa 103  Q
    |||||||||||||||||||||||| |||| ||   |||| |||||||  || |||||||||||||  |||||| ||||| |||||||||||||||| |||    
T  23438446 cttgatgtatgaattgaaatgataagttgtaaatatcattacttccattttcttgtctgttgtaaccatgccagcatatcaatacatgatctgaaattaa 23438545  T
Q  104 tg 105  Q
    ||    
T  23438546 tg 23438547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 23461833 - 23461934
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaa 103  Q
    |||||||| ||||||||| |||||||| ||| ||||||| |||||||  || |||| ||||||||  ||||||||  || |||||||||||||||| |||    
T  23461833 gaccttgaagtatgaatttaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaacgcatcaatacatgatctgaaattaa 23461932  T
Q  104 tg 105  Q
    ||    
T  23461933 tg 23461934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 23452725 - 23452835
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaa---tcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaac 100  Q
    |||||||| ||| ||| ||||||||||||||||||   |||| |||||||  || |||| ||||||||  || ||| ||||| ||||||||||||||||     
T  23452725 gaccttgaagtaggaactgaaatgataggttgcaaaagtcatgacttccagtttcttgtttgttgtaaccattccagcatatcaatacatgatctgaaat 23452824  T
Q  101 taatgccccaa 111  Q
    ||||| |||||    
T  23452825 taatgtcccaa 23452835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 10005 - 10111
Alignment:
Q  4 gaccttgatgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatgatctgaaactaa 103  Q
    |||||||| ||||||||| |||||||| ||| ||||||| |||||||  || |||||| ||||||  |||||| ||||| |||||||||||||||| |||    
T  10005 gaccttgaagtatgaatttaaatgataagttacaatcataacttccattttcttgtctattgtaaccatgccagcatatcaatacatgatctgaaattaa 10104  T
Q  104 tgcccca 110  Q
    || ||||    
T  10105 tgtccca 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 15043187 - 15043266
Alignment:
Q  12 tgtatgaattgaaatgataggttgcaatcatcacttccaaatttttgtctgttgtaaggatgccaacatattaatacatg 91  Q
    ||||||||||||||||||| ||||||||||| ||| |||   | |||| |||||||| ||||||||||||| | ||||||    
T  15043187 tgtatgaattgaaatgataagttgcaatcattactcccactctcttgtatgttgtaacgatgccaacatatcactacatg 15043266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University