View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_low_12 (Length: 250)
Name: NF8146_low_12
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2737916 - 2738166
Alignment:
| Q |
1 |
ataaaatccacactccttcaacctcatcactaacatatgagtttcattaattcatcgttaaccaaattccagtgtctgtctgcacgttagtaatggacga |
100 |
Q |
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| T |
2737916 |
ataaaatccacactccttcaacctcatcac-aacatatgagtttcattaattcatcgttaaccaaattccagtgtctgtctgcaggttagtaatggacga |
2738014 |
T |
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| Q |
101 |
tgttattcctagacaatcatctataaaggagaagttgaaaaattcgatatgttgcttcaccggaaatcttc---------atcatcatggtgatgattcg |
191 |
Q |
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| T |
2738015 |
tgttattcctagacaatcatctataaaggagaagttgaaaaattcgatatgttgcttcaccggaaatcttcatcatcataatcatcatggtgatgattcg |
2738114 |
T |
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| Q |
192 |
ccaataggaggagaaggattctacaacaagttacacataccaagaacaccaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2738115 |
ccaataggaggagaaggattctacaacaagttacacataccaagaacaccaa |
2738166 |
T |
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