View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_low_3 (Length: 440)
Name: NF8146_low_3
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 36086274 - 36085864
Alignment:
| Q |
16 |
atcaagagataaaagaaggaaggtatggatctgagcacaacacttggttatactcgtggatgctttcaaacctctcgaagaagagaaagttgcttcagcc |
115 |
Q |
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| T |
36086274 |
atcaagagataaaagaaggaaggtatggatctgagcacaacacttggttatactcgtggatgctttcaaacctctcgaagaagagaaagttgcttcagcc |
36086175 |
T |
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| Q |
116 |
aatctcaagtcgctatggaagaaagtttaggaaaatttgaagactaaggtagctggagatgctgctcctggcgatgtttagattcttcttacttctaagg |
215 |
Q |
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| T |
36086174 |
aatctcaagtcgctatggaagaaagtttaggaaaatttgaagactaaggtagctggagatgctgctcctggcgatgtttagattcttcttacttctaagg |
36086075 |
T |
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| Q |
216 |
aacattctgtttcaatgagatctcttgtggtgagtggattttacgtgagcttgatcatgcaggtaggttcttctgttgtttcggattgtttatgtctctc |
315 |
Q |
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| T |
36086074 |
aacattctgtttcaatgagatctcttgtggtgagtggattttacgtgagcttgatcatgcaggtaggttcttctgttgtttcggattgtttatgtctctc |
36085975 |
T |
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| Q |
316 |
ttttttattatgatcattggtttgaactttgtgtttcttattataactttgatgactgattcctggaaatattatatcttttgcatgatgttatatgtag |
415 |
Q |
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| T |
36085974 |
ttttttattatgatcattggtttgaactttgtgtttcttattataactttgatgactgattcctggaaatattatatcttttgcatgatgttatatgtag |
36085875 |
T |
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| Q |
416 |
aatgttaactt |
426 |
Q |
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| T |
36085874 |
aatgttaactt |
36085864 |
T |
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Back To:
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 48392994 - 48393077
Alignment:
| Q |
172 |
agatgctgctcctggcgatgtttagattcttcttacttctaaggaacattctgtttcaatgagatctcttgtggtgagtggatt |
255 |
Q |
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| T |
48392994 |
agatgctgctcctggtgatgttcagattcttcttacttctaaggaggattccgtttccatgagatcgcttggggtgagttgatt |
48393077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 40730108 - 40730144
Alignment:
| Q |
390 |
tatcttttgcatgatgttatatgtagaatgttaactt |
426 |
Q |
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| T |
40730108 |
tatcttttgcatgatgttatatgtagaatgttaactt |
40730144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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