View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8146_low_5 (Length: 330)
Name: NF8146_low_5
Description: NF8146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8146_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 31916237 - 31915948
Alignment:
| Q |
18 |
gtgtggagaggaataaattatgtgttgttacgggcagccgtaacggactctgcttccagctgtgattttccatcttcgtcttcattaagtaatggtcacg |
117 |
Q |
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| T |
31916237 |
gtgtggagaggaataaattatgt------acgggcagccgtaacggactctgcttccagctgtgattttccatcttcgtcttcattaagtaatggtcacg |
31916144 |
T |
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| Q |
118 |
attttgaatcttttggcaatgcatctgaaagtgtcgtaacttgatttctcactatttttgcattgaagaaagcctccattatcataaatccaatcatggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31916143 |
attttgaatcttttggcaatgcatctgaaagtgttgtaacttgatttctcactatttttgcattgaagaaagcctccattatcataaatccaatcatggc |
31916044 |
T |
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| Q |
218 |
catcaagtcttcaacaaatacaattatgtcatcataattccaccatttttgttacattttctttatctatcctatttaccgtctagatcgctttcttct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31916043 |
catcaagtcttcaacaaatacaattatgtcatcataattccaccatttt--ttacattttc-ttatctatcctatttaccgtctagatcgctttcttct |
31915948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 4327414 - 4327479
Alignment:
| Q |
171 |
atttttgcattgaagaaagcctccattatcataaatccaatcatggccatcaagtcttcaacaaat |
236 |
Q |
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|||||| |||| ||||||||||||| | |||||||||||||| || ||||||| |||||||||| |
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| T |
4327414 |
atttttacattaaagaaagcctccaatctcataaatccaatcttgatcatcaagaattcaacaaat |
4327479 |
T |
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