View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8147_high_1 (Length: 507)
Name: NF8147_high_1
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8147_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 4 - 488
Target Start/End: Original strand, 2919606 - 2920095
Alignment:
| Q |
4 |
agatggaaaccaaaattttaggtacgtaagaagttatttgttctggttgcttagtcaatatccttgcggcactgtttatcattctcctataataaatcat |
103 |
Q |
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| T |
2919606 |
agatggaaaccaaaattttaggtatgtaagaagttatttgttctggttgcttagtcaatatccttgcggcactgtttagcattctactataataaatcat |
2919705 |
T |
|
| Q |
104 |
caaatttgatccctaaaattataaagcactaataaatattttataatagtttttaaacttgaaaatttctcttcaatcatattagagcatctttaatgat |
203 |
Q |
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| T |
2919706 |
caaatttgatccctaaaattataaagcactaataaatattttataatagtttttaaacttgaaaatttctcttcaatcatattagagcatctctaatgat |
2919805 |
T |
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| Q |
204 |
agtctttcaagaggtcctaagtcgaaaaagtgt-----taacaagtgtcatcgtttggaggacttatatttctttaataagccacttattattttgtttt |
298 |
Q |
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| T |
2919806 |
agtctttcaagaggtcctaagtcgaaaaagtgtatccttaacaagtgtcatcgtttggaggacttatatttctttaataagccacttattattttgtttt |
2919905 |
T |
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| Q |
299 |
aattttgcagcaaaactatacattccttctctgaggagctaacagagttggatcaaattattaggaagatgattttggaaagtttaggtgttgaaaagta |
398 |
Q |
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| T |
2919906 |
aattttgcagcaaaactatacattccttctctgaggagctaacagagttggatcaaattattaggaagatgattttggagagtttaggtgttgaaaagta |
2920005 |
T |
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| Q |
399 |
cttggaggaacacatgaactcaaccaattatcttctcagagttatgaaatacaaaggccctcaaacaagtgacacaaaattaggcctcag |
488 |
Q |
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| T |
2920006 |
cttggaggaacacatgaactcaaccaattatcttctcagagttatgaaatacaaaggccctcaaacaagtgacacaaaattaggcctcag |
2920095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 301 - 487
Target Start/End: Original strand, 2934725 - 2934911
Alignment:
| Q |
301 |
ttttgcagcaaaactatacattccttctctgaggagctaacagagttggatcaaattattaggaagatgattttggaaagtttaggtgttgaaaagtact |
400 |
Q |
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|||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2934725 |
ttttgcagtgaaaccatacattccttctctgaggagctaattgagttggatcagattattaggaagatgattttggaaagtttaggtgttgaaaagtact |
2934824 |
T |
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| Q |
401 |
tggaggaacacatgaactcaaccaattatcttctcagagttatgaaatacaaaggccctcaaacaagtgacacaaaattaggcctca |
487 |
Q |
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|||| ||||||||||||||||||||||| | ||||| | |||||| ||||||||||||||||||||||| |||||| |||| |||| |
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| T |
2934825 |
tggaagaacacatgaactcaaccaattaccgactcagggctatgaagtacaaaggccctcaaacaagtgatacaaaagtaggtctca |
2934911 |
T |
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