View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8147_high_5 (Length: 219)
Name: NF8147_high_5
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8147_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1531142 - 1531345
Alignment:
| Q |
1 |
gggtgtgaagaattacaaaaactctttaattgaagttgcagattttttatgttgctgcttttcaagtaaaaggcccactctaaaggnnnnnnnnnnnnng |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1531142 |
gggtgtgaagaattacaaaaactctttaattgaagttgcagattttttatgttgctgcttttcaagtaaaaggcccactctaaaggtatttttttttttg |
1531241 |
T |
|
| Q |
101 |
tttatattgtcctaatctttagtctatgtcagtatagaattaatagtgcatagtttaaattttattttgctgacggaattgtaacgtagagaaaggttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1531242 |
tttatattgtcctaatctttagtctatgtcagtatagaattaatagtgcatagtttaaattttattttgctgacggaattgtaacgtagagaaaggttaa |
1531341 |
T |
|
| Q |
201 |
atgt |
204 |
Q |
| |
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|||| |
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| T |
1531342 |
atgt |
1531345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26849991 - 26850193
Alignment:
| Q |
1 |
gggtgtgaagaattacaaaaactctttaattgaagttgcagattttttatgttgctgcttttcaagtaaaaggcccactctaaaggnnnnnnnnnnnnng |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
26849991 |
gggtgtgaagacttacaaatactctttaattgaagttgcagattttttatgttgctttttttcaagtaaaaggcccactttaaaggtatttttttttt-g |
26850089 |
T |
|
| Q |
101 |
tttatattgtcctaatctttagtctatgtcagtatagaattaatagtgcatagtttaaattttattttgctgacggaattgtaacgtagagaaaggttaa |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26850090 |
tttatattgtcctaatctttagtctaagtcagtatagaattaatattgcatagtttaaattttattttgctgacggaattgtaacgtagagaaaggtcaa |
26850189 |
T |
|
| Q |
201 |
atgt |
204 |
Q |
| |
|
|||| |
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|
| T |
26850190 |
atgt |
26850193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30433805 - 30433614
Alignment:
| Q |
1 |
gggtgtgaagaattacaaaaactctttaattgaagttgcagattttttatgttgctgcttttcaagtaaaaggcccactctaaaggnnnnnnnnnnnnng |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||| ||| ||| |||||| ||||||||||||||||||| ||||||||||| | |
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| T |
30433805 |
gggtgtgaagacttacaaaagctctttaattaaagttgctgatattt-atgttgttgcttttcaagtaaaaggctcactctaaagg----tatttttttg |
30433711 |
T |
|
| Q |
101 |
tttatattgtcctaatctttagtctatgtcagtatagaattaatagtgcatagtttaaattttattttgctgacggaattgtaacgtagagaaaggt |
197 |
Q |
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|||| ||||| ||||||||||||||||||| | ||| ||| | || |||||| | ||||||||||||||| | |||||||||| ||| |||||||| |
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| T |
30433710 |
tttacattgttctaatctttagtctatgtctgcataaaatcagtattgcataatataaattttattttgcagctggaattgtaatgtaaagaaaggt |
30433614 |
T |
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