View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8147_low_2 (Length: 572)

Name: NF8147_low_2
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8147_low_2
NF8147_low_2
[»] chr3 (1 HSPs)
chr3 (10-572)||(1530563-1531125)
[»] chr5 (5 HSPs)
chr5 (10-505)||(22475656-22476151)
chr5 (298-572)||(26849702-26849974)
chr5 (69-297)||(26849093-26849310)
chr5 (198-303)||(15425488-15425593)
chr5 (10-73)||(26842341-26842404)
[»] chr1 (4 HSPs)
chr1 (12-301)||(8425218-8425512)
chr1 (160-301)||(30235367-30235508)
chr1 (10-108)||(30234303-30234401)
chr1 (126-155)||(30235018-30235047)
[»] chr4 (2 HSPs)
chr4 (161-301)||(5690017-5690159)
chr4 (176-301)||(25154144-25154269)
[»] chr2 (2 HSPs)
chr2 (163-301)||(29759051-29759189)
chr2 (126-155)||(29758710-29758739)
[»] chr7 (4 HSPs)
chr7 (488-572)||(30433822-30433906)
chr7 (365-476)||(30434431-30434543)
chr7 (10-109)||(39327815-39327914)
chr7 (160-228)||(39327286-39327354)


Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Original strand, 1530563 - 1531125
Alignment:
10 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1530563 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttc 1530662  T
110 aaagataatgacggcattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1530663 aaagataatgacggcattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatga 1530762  T
210 ttgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaaatctaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1530763 ttgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaaatctaaat 1530862  T
310 agatgatatgaatgtatatgataatgtggtgggttgtgatttctaactcaaccgacaatgcaaagaagatgcatgccaatcatgatttagttactggcca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1530863 agatgatatgaatgtatatgataatgtggtgggttgtgatttctaactcaaccgacaatgcaaagaagatgcatgccaatcatgatttagttactggcca 1530962  T
410 tcagaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaattagtcatgctacttaggcacctgtctattggagca 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1530963 tcagaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaattagtcatgctacttaggcacctgtctattggagca 1531062  T
510 aatttagaataataacttttctgcttttgatgtaatagaatatcacttttgaataagtcaatc 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1531063 aatttagaataataacttttctgcttttgatgtaatagaatatcacttttgaataagtcaatc 1531125  T

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Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Complemental strand, 22476151 - 22475656
Alignment:
10 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttc 109  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
22476151 gaagaagggaaaacctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttc 22476052  T
110 aaagataatgacggcattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatga 209  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||    
22476051 aaagataatgccggcgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggcaacgagtgtgctgagctttggcctatga 22475952  T
210 ttgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaaatctaaat 309  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
22475951 ttgcaagtgctgccaataccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttttggaaattttaatacaaatctaaat 22475852  T
310 agatgatatgaatgtatatgataatgtggtgggttgtgatttctaactcaaccgacaatgcaaagaagatgcatgccaatcatgatttagttactggcca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
22475851 agatgatatgaatgtatatgataatgtggtgggttgtgatttctaactcaaccggcaatgcaaagaagatgcatgccaatcatgatttagttaatggcca 22475752  T
410 tcagaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaattagtcatgctacttaggcacctgtctattgg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
22475751 tcagaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaatttgtcatgctacttaggcacctatctattgg 22475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 298 - 572
Target Start/End: Original strand, 26849702 - 26849974
Alignment:
298 acaaatctaaatagatgatatgaatgtatatgataatgtggtgggtt--gtgatttctaactcaaccgacaatgcaaagaagatgcatgccaatcatgat 395  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| |||||||||||||||||||||||||    
26849702 acaaatttaaatagatgatatgaatgtatatgataatgtggtgggttatgtgatttctaactcaactggcaatgtaaagaagatgcatgccaatcatgat 26849801  T
396 ttagttactggccatcagaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaattagtcatgctacttaggcacc 495  Q
    ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26849802 ttagttactggc----agaagaactcaaataacttttgggtatacttcatgctttctccttttcatgtgtagggttaattagtcatgctacttaggcacc 26849897  T
496 tgtctattggagcaaatttagaataataacttttctgcttttgatgtaatagaatatcacttttgaataagtcaatc 572  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
26849898 tgtctattggtgcaaatttagaagaacaacttttctgcttttgatgtaatagaatatcacttttgaataagtcaatc 26849974  T

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Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 69 - 297
Target Start/End: Original strand, 26849093 - 26849310
Alignment:
69 gtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaagattatgctatcac 168  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||           ||||||    
26849093 gtaagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg-----------tatcac 26849181  T
169 tggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtag 268  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26849182 tggaccaattggtaatgaatgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtag 26849281  T
269 tgctgatgccattttgtggaaattttaat 297  Q
    |||||||||||||| ||||||||||||||    
26849282 tgctgatgccatttagtggaaattttaat 26849310  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 15425488 - 15425593
Alignment:
198 tttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaat 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||| | |||||| |||||||| | |||||||    
15425488 tttggcctaggattgcaagtgctgccaatgccattgtatgagtgttgattctgtttcaagatcgcaagtagttccgatgcccttttgtggcagttttaat 15425587  T
298 acaaat 303  Q
    ||||||    
15425588 acaaat 15425593  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 26842341 - 26842404
Alignment:
10 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaag 73  Q
    ||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
26842341 gaagaagggaatacctgatctcaggaagaaggttttgcgtgttgtcatcgttcgtcagcgtaag 26842404  T

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Target: chr1 (Bit Score: 168; Significance: 9e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 8425218 - 8425512
Alignment:
12 agaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaa 111  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| |    
8425218 agaagggaaaacctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcga 8425317  T
112 agataatgacggcattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgatt 211  Q
    ||||||||  ||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||||||| ||||    
8425318 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggagtgtgctgatctttggcctaggatt 8425417  T
212 gcaagtgc-------tgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaa 301  Q
    |||| |||       ||||||||||||  |||||||||||||| ||||||||||||||| ||||||| |||||||  |||||| |||||||||||||    
8425418 gcaaatgctgccaagtgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgccgatgcca--ttgtggcaattttaatacaa 8425512  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 30235367 - 30235508
Alignment:
160 tgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagat 259  Q
    ||||||||| || ||||||| ||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
30235367 tgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagat 30235466  T
260 tgcaggtagtgctgatgccattttgtggaaattttaatacaa 301  Q
    |||| ||||||| ||||||||| ||||  |||||||||||||    
30235467 tgcaagtagtgccgatgccattgtgtgacaattttaatacaa 30235508  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 30234303 - 30234401
Alignment:
10 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtactt 108  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||    
30234303 gaagaagggaaagcctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactt 30234401  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 30235018 - 30235047
Alignment:
126 ttattgtgaatcctaagggagaaatgaaag 155  Q
    ||||||||||||||||||||||||||||||    
30235018 ttattgtgaatcctaagggagaaatgaaag 30235047  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 161 - 301
Target Start/End: Complemental strand, 5690159 - 5690017
Alignment:
161 gctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaag--a 258  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||  |    
5690159 gctatcacaggaccaattggtaaggagtgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagtgttgattctgtttcaagata 5690060  T
259 ttgcaggtagtgctgatgccattttgtggaaattttaatacaa 301  Q
    ||||| ||||| |||||||| |||||||| | |||||||||||    
5690059 ttgcaagtagttctgatgcccttttgtggcagttttaatacaa 5690017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 25154144 - 25154269
Alignment:
176 attggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgat 275  Q
    |||| ||| |||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||| | |||    
25154144 attgataaggagtatgctgatctttggcctaggattgcaagtgctgccaatgccattgcatgagtgttgattctgtttcaagattgcaagtagttccgat 25154243  T
276 gccattttgtggaaattttaatacaa 301  Q
    ||| |||||||| | |||||||||||    
25154244 gcccttttgtggcagttttaatacaa 25154269  T

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Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 29759051 - 29759189
Alignment:
163 tatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgc 262  Q
    |||||| ||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
29759051 tatcacaggaccaattggaaaggagtgtgctgatctttggcctaggattgcaagtgctgccaatgtcattgtatgagtgttgattctgtttcaagattgc 29759150  T
263 aggtagtgctgatgccattttgtggaaattttaatacaa 301  Q
    | ||||| |  ||||| |||||||| | |||||||||||    
29759151 aagtagttccaatgcccttttgtggcagttttaatacaa 29759189  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 29758710 - 29758739
Alignment:
126 ttattgtgaatcctaagggagaaatgaaag 155  Q
    ||||||||||||||||||||||||||||||    
29758710 ttattgtgaatcctaagggagaaatgaaag 29758739  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 488 - 572
Target Start/End: Complemental strand, 30433906 - 30433822
Alignment:
488 taggcacctgtctattggagcaaatttagaataataacttttctgcttttgatgtaatagaatatcacttttgaataagtcaatc 572  Q
    ||||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||| ||||||||||||||||||||||||    
30433906 taggcacctttctattggagcaaattgagacgaaaaacttttctgcatttgatgtaataggatatcacttttgaataagtcaatc 30433822  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 476
Target Start/End: Complemental strand, 30434543 - 30434431
Alignment:
365 caatgcaaagaagatgcatgccaatcatgatttagttactggccatcagaagaactcaaataacttttgggtatacttcatg-ctttctccttttcatgt 463  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||| |||||| | |||||||||| ||  ||||||||| ||||||    
30434543 caatgcaaagaagatgcattccaatcatgatttagttcatggccataagaagaactcaattaacttcttggtatacttcgtgtgtttctccttctcatgt 30434444  T
464 gtagggttaatta 476  Q
    | | |||||||||    
30434443 gcaaggttaatta 30434431  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 39327914 - 39327815
Alignment:
10 gaagaaggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttc 109  Q
    ||||||||| || ||||||||| | ||||||||  | || |  |||||||||||||||||||| || ||||||| ||||||  |||| ||||||||||||    
39327914 gaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgtaaaccatggcgccgaaaggacggtgttttcatgtacttc 39327815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 39327354 - 39327286
Alignment:
160 tgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgc 228  Q
    |||||| ||||| |||||||  || ||||||||||| || ||||||| ||||||||||||||| |||||    
39327354 tgctattactggtccaattgcgaaggagtgtgctgatctatggcctaggattgcaagtgctgctaatgc 39327286  T

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