View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8147_low_4 (Length: 362)
Name: NF8147_low_4
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8147_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 43341343 - 43341678
Alignment:
| Q |
18 |
ctaacaaaataaagaataacaaaaggtaaggagaaatattaccgctctagtggaggtttgtcttgtttttggattcattttccggtttgaataatctggc |
117 |
Q |
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| T |
43341343 |
ctaacaaaataaagaataacaaaaggtgaggagaaatattaccgctctagtggaggtttgtcttgtttttggattcattttccggtttgaataatctggc |
43341442 |
T |
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| Q |
118 |
aactttggctcctgcattgaaatcatttctaggttaaaaaattgttcatcattttttcttttgaaacagcaaaatatattaattttcttgattcaagcac |
217 |
Q |
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| T |
43341443 |
aactttggctcctgcattgaaatcatttctaggttaaaaaattgctcatcattttttcttttgaaacagcaaaatatattaattttcttgattcaagcac |
43341542 |
T |
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| Q |
218 |
aaggcatataagacttgaatcgaagaactacaaagtttgcaaatttcacattcacaatgatagatactaataaagaacacaaggcaccaaattgcgacta |
317 |
Q |
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| T |
43341543 |
aaggcatataagacttgaatcgaagaactacaaagtttgcaaatttcacattcacaatgatagatactaataaagaacacaaggcaccaaattgcgacta |
43341642 |
T |
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| Q |
318 |
atacaccaatacaatacaagtgaacaaaccttcatc |
353 |
Q |
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| T |
43341643 |
atacaccaatacaatacaagtgaacaaaccttcatc |
43341678 |
T |
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