View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8147_low_5 (Length: 298)
Name: NF8147_low_5
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8147_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 38680858 - 38681128
Alignment:
| Q |
18 |
ccttgttcatcagcagcataagctgttccatttcccaataatgccggcaaaccaacaccgacatttccaagcaacaatttcagaatcccccttcttcctt |
117 |
Q |
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| T |
38680858 |
ccttgttcatcagcagcataagctgttccatttcccaataatgccggcaaaccaacaccgacatttccaagcaacaatttcagaatcccccttcttcctt |
38680957 |
T |
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| Q |
118 |
cctgatgattatgttccaaggatgcttttatggaaaatgattttgatgccttattattcaaggatgaaaatctccatgatgaaaagagatatctaccatt |
217 |
Q |
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| T |
38680958 |
cctgctgattctgttccaaggatgcttttatggaaaatgattttgatgccttattattcaaggatgaaaatctccatgatgaaaagagatatctaccatt |
38681057 |
T |
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| Q |
218 |
caaatctttaccaagagtagttctattactgtttgtggataaagcattaccaacaagacatgctgatgatg |
288 |
Q |
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| T |
38681058 |
caaatctttaccaagagtagttctattactgtttgtggataaagcattaccaacaagacatgctgatgatg |
38681128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 31932601 - 31932352
Alignment:
| Q |
17 |
accttgttcatcagcagcataagctgttccatttcccaataatgccggcaaaccaacaccgacatttccaagcaacaatttcagaatcccccttcttcct |
116 |
Q |
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|||||||||||||| ||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| ||||| || |
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| T |
31932601 |
accttgttcatcagtggcataagcttttctatttcccaataatgcaggcaagccaacaccgacatttccaagaaacaatt----aatcccttttcttact |
31932506 |
T |
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| Q |
117 |
tcctgatgattatgttccaaggatgcttttatggaaaatgattttgatgccttattattcaaggatgaaaatctccatgatgaaaagagatatctaccat |
216 |
Q |
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||||| ||||| || || ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||| |
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| T |
31932505 |
tcctgttgattttgatctaaggatggttttatggaaaatgattttgatgccttattattcaatgaagaaaatctccaagatgaaaagagatatcttccat |
31932406 |
T |
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| Q |
217 |
tcaaatctttaccaagagtagttctattactgtttgtggataaagcattaccaa |
270 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31932405 |
tcaagtccttaccaagagtagttctattactgtttgtggataaagcattaccaa |
31932352 |
T |
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