View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8147_low_6 (Length: 259)

Name: NF8147_low_6
Description: NF8147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8147_low_6
NF8147_low_6
[»] chr4 (13 HSPs)
chr4 (1-250)||(50249645-50249893)
chr4 (5-114)||(37826021-37826128)
chr4 (83-152)||(48734359-48734428)
chr4 (84-152)||(48865055-48865121)
chr4 (46-104)||(7801490-7801548)
chr4 (83-152)||(48853665-48853735)
chr4 (83-157)||(45370972-45371046)
chr4 (5-113)||(50669907-50670013)
chr4 (13-84)||(7772880-7772946)
chr4 (46-100)||(7814330-7814384)
chr4 (46-100)||(7823822-7823876)
chr4 (118-152)||(50681946-50681980)
chr4 (111-152)||(7879391-7879432)
[»] chr7 (1 HSPs)
chr7 (82-152)||(48884917-48884987)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 50249893 - 50249645
Alignment:
Q  1 aatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249893 aatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 50249794  T
Q  101 ttcagcggactctatt-aactttggcccttgccatttatctgtttcaaaccagaaaagnnnnnnnnctaatttcaaaattattcagttctgctctctatg 199  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||    
T  50249793 ttcagtggactctattaaactttggcccttgccatttatctgtttcaaaccaggaaa--aaaaaaactaatttcaaaattattcagttctgctctctatg 50249696  T
Q  200 ttctttactctctttatattcagtctagataggatttcttttcagaattat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249695 ttctttactctctttatattcagtctagataggatttcttttcagaattat 50249645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 37826128 - 37826021
Alignment:
Q  5 tatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaa---aaggttttgttctctaatt 101  Q
    |||||| ||||||||||||||||| ||||||||||      ||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||    
T  37826128 tatgtttttgtcactgtctgaaatggttttatatg-----gtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatt 37826034  T
Q  102 tcagcggactcta 114  Q
    |||| ||||||||    
T  37826033 tcagtggactcta 37826021  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 48734428 - 48734359
Alignment:
Q  83 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 152  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  48734428 aaggttttcttctctaattttagcggactctattaactttagcccttgccatttctctgtttcaaaccag 48734359  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 48865055 - 48865121
Alignment:
Q  84 aggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 152  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||||  |||||||||||||||    
T  48865055 aggttttgttctctaatttcagcggactccattatctatggccattgccatt--tctgtttcaaaccag 48865121  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 7801490 - 7801548
Alignment:
Q  46 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttca 104  Q
    |||| |||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  7801490 taaaataatctaattagtttatgcatgttgaaggagaaaggttttgttctctaatttca 7801548  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 48853665 - 48853735
Alignment:
Q  83 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctg-tttcaaaccag 152  Q
    |||||||||||||||||||| || |||  ||||||| ||||||||||||||||| |||| |||||||||||    
T  48853665 aaggttttgttctctaattttagtggaaactattaagtttggcccttgccatttctctgttttcaaaccag 48853735  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 45371046 - 45370972
Alignment:
Q  83 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccagaaaag 157  Q
    ||||||||||||||||| || || ||||||||||||||||  |||||||||| | ||  ||||||||||| ||||    
T  45371046 aaggttttgttctctaaatttagtggactctattaactttatcccttgccatctctcaatttcaaaccaggaaag 45370972  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 50669907 - 50670013
Alignment:
Q  5 tatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaag---gttttgttctctaatt 101  Q
    ||||||||||| ||||  ||||||||||||||||| |||| |||     |||| | | ||||||||| |||||||||||||   ||||||||||||||||    
T  50669907 tatgttgttgtgactgcttgaaattgttttatatggtaaactaa-----tctggttaatttatgcatgttgaaggaaaaagaaggttttgttctctaatt 50670001  T
Q  102 tcagcggactct 113  Q
    | || |||||||    
T  50670002 ttagtggactct 50670013  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7772946 - 7772880
Alignment:
Q  13 tgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaa 84  Q
    ||||||||  |||||||||||||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatg-----gtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 7814330 - 7814384
Alignment:
Q  46 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 100  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7814330 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7814384  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 7823822 - 7823876
Alignment:
Q  46 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 100  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7823822 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7823876  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 50681946 - 50681980
Alignment:
Q  118 actttggcccttgccatttatctgtttcaaaccag 152  Q
    ||||||||||||||||||| |||||||||||||||    
T  50681946 actttggcccttgccatttctctgtttcaaaccag 50681980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 7879391 - 7879432
Alignment:
Q  111 tctattaactttggcccttgccatttatctgtttcaaaccag 152  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7879391 tctactaactttggcccttgtcatttctctgtttcaaaccag 7879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 48884917 - 48884987
Alignment:
Q  82 aaaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 152  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||| |||||   |||||||||||||    
T  48884917 aaaggctttgttctctaatttcaatggactctattaactctggcccttgtcatttcattgtttcaaaccag 48884987  T

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