View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8148_high_1 (Length: 391)
Name: NF8148_high_1
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8148_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 216 - 373
Target Start/End: Original strand, 16200771 - 16200928
Alignment:
| Q |
216 |
tcatgtagtaagattgagttaattatcacgatcacatactaagtacctattatttgaaacttaactattatacaatatgaatacagattccaatacacca |
315 |
Q |
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| T |
16200771 |
tcatgtagtaagattgagttaattatcacgatcacatactaagtacctattatttgaaacttaactattatgcaatatgaatacagattccaatacacaa |
16200870 |
T |
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| Q |
316 |
cataggaacattgtaagtcattagatgtagaaatgtatcaaaccacctcagatataca |
373 |
Q |
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| T |
16200871 |
cataggaacattgtaagtcattagatgtagaaatgtatcaaaccacctcagatataca |
16200928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 16198791 - 16198875
Alignment:
| Q |
108 |
gaaatgcaagtgaatttggtgcttcaacaggagaatcctatgaggcaagtctttgtaagtgttgtgttgtcttggttgtatatcaa |
193 |
Q |
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| T |
16198791 |
gaaatgcaagtggatttggtgttacaacagtagagtcctatgaggcaagtctt-gtaagtgttgtgttgtcttggttgtatatcaa |
16198875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 32669040 - 32669204
Alignment:
| Q |
17 |
tgaagcttcagagcagttcgttattataatgttctgtatctaggatcaggttctagtgttgttttggtgtcgaagagacgcatctagggtggaaatgcaa |
116 |
Q |
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| T |
32669040 |
tgaagcttcatagcagttcgttactttaatgttctgtttttaggatcatgttctggtgttgtattggtgtcgaagagacgggacttgggaggaattgcaa |
32669139 |
T |
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| Q |
117 |
gtgaatttggtgcttcaacaggagaatcctatgaggcaagtctttgtaagtgttgtgttgtcttg |
181 |
Q |
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| T |
32669140 |
gtggtttttgtgctagaagagcataatcctttgaggcaagtctttgtaagtgttgcattgtcttg |
32669204 |
T |
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