View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8148_high_6 (Length: 230)
Name: NF8148_high_6
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8148_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 5832473 - 5832334
Alignment:
| Q |
73 |
ctaaagcgtgacatatatttatttattctaaagtttctttaattcttctatgcaaggaagtttggttctttttaattctcacaaaaataatcattgctca |
172 |
Q |
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| T |
5832473 |
ctaaagcgtgacatatattt---tattctaaagtttctttaattcttctatgcaaggaagttttgttctttttaattctcacaaaaataatca-tgctca |
5832378 |
T |
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| Q |
173 |
cctttccttacatttagagcaatgtttattcatgttctgttctt |
216 |
Q |
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| T |
5832377 |
cctttccttacatttagagcaatgtttattcatgttctgttctt |
5832334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 5832518 - 5832458
Alignment:
| Q |
3 |
attagtttaagagaccaaattgtccaatatctacaattttggagactaaagtgtgacatat |
63 |
Q |
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| T |
5832518 |
attagtttaagagaccaaattgtccaatatctacaattttggaggctaaagcgtgacatat |
5832458 |
T |
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