View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8148_low_1 (Length: 634)

Name: NF8148_low_1
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8148_low_1
NF8148_low_1
[»] chr3 (1 HSPs)
chr3 (4-634)||(54347550-54348180)
[»] chr4 (5 HSPs)
chr4 (294-358)||(26152414-26152478)
chr4 (294-355)||(26152277-26152338)
chr4 (291-403)||(27318348-27318460)
chr4 (118-174)||(26152712-26152768)
chr4 (127-175)||(27318767-27318815)


Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 4 - 634
Target Start/End: Complemental strand, 54348180 - 54347550
Alignment:
Q  4 gcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccagcgaggcaggaacctattaaggagaaaaggttgatgatgcctactaggattt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348180 gcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccggcgaggcaggaacctattaaggagaaaaggttgatgatgcctactaggattt 54348081  T
Q  104 caatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataacatacatatagtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348080 caatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataacatacatatagtt 54347981  T
Q  204 agttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattata----tagtcactacttacca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  54347980 agttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattatatatgtagtcactacttacca 54347881  T
Q  300 taaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaatcctcaagagact 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54347880 taaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaatcctcaagagact 54347781  T
Q  400 tcagctgaactggtgttttctcctcagccataattcttaagtag---tataacacaatcagattgaattaatatagcaatggaagtacgtacgtactgca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  54347780 tcagctgaactggtgttttctcctcagccataattcttaagtagttatataacacaatcagattgaattaatatagcaatggaa----gtacgtactgca 54347685  T
Q  497 caaagagactgatcaattaatagaaaacactctatcagagaaatagaaaaatgttgagtttgataatgatatatagctagatacgtgcatgcatgaataa 596  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54347684 caaagagactgatcaattaatagaaaaca--ctatcagagaaatagaaaaatgttgagtttgatattgatatatagctagatacgtgcatgcatgaataa 54347587  T
Q  597 tgagaattagacaacaggtttgatagataaatagatag 634  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  54347586 tgagaattagacaacaggttt-atagataaatagatag 54347550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 26152478 - 26152414
Alignment:
Q  294 ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgtt 358  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| |||||||    
T  26152478 ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatacttgtt 26152414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 26152338 - 26152277
Alignment:
Q  294 ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaactt 355  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| ||||    
T  26152338 ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatactt 26152277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 27318460 - 27318348
Alignment:
Q  291 tacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaatcct 390  Q
    ||||||||||| |||||||  || |||||||| |||||||| |||||||| ||  ||||||||||||||  || | | || ||||||| | ||||||| |    
T  27318460 tacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttccttttgagctttttttgaggaccaaaatctt 27318361  T
Q  391 caagagacttcag 403  Q
    ||||||| |||||    
T  27318360 caagagatttcag 27318348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 26152768 - 26152712
Alignment:
Q  118 gatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatct 174  Q
    |||| ||| ||||||||||||||||| ||  ||||||||||||| || |||||||||    
T  26152768 gatactttaaggtctctttttatgtagattgctgctccactcataacaccaatatct 26152712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 27318815 - 27318767
Alignment:
Q  127 aggtctctttttatgtatatcactgctccactcatcaccccaatatctg 175  Q
    |||||||||||||| || ||  |||||||||||||||| ||||||||||    
T  27318815 aggtctctttttatatagatggctgctccactcatcacaccaatatctg 27318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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