View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8148_low_12 (Length: 225)
Name: NF8148_low_12
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8148_low_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 48271095 - 48271319
Alignment:
| Q |
1 |
caggttgaatgtctttcatgttttctcttctatgattttttaaaatcagcagacctgagctaacacctttttgttggaactttacaagattataaagaac |
100 |
Q |
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| T |
48271095 |
caggttgaatgtctttcatgttttctcttctatgattttttaaaatcagcagacctgagctaacacctttttgttggaactttacaagattataaagaac |
48271194 |
T |
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| Q |
101 |
tgtgaccttgaagagctgacagaattgggttctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactg |
200 |
Q |
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| T |
48271195 |
tgtgaccttgaagagctgacagaattgggttctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactg |
48271294 |
T |
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| Q |
201 |
atagatgttttgctggaaagccttc |
225 |
Q |
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| T |
48271295 |
atagatgttttgctggaaagccttc |
48271319 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 25242861 - 25242984
Alignment:
| Q |
102 |
gtgaccttgaagagctgacagaattgggttctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactga |
201 |
Q |
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| T |
25242861 |
gtgaccttgaagagctagtagaattgggctctgggacctttgggactgtgtatcatggaaagtggagaggtactgatgttgcaataaagcggatcaatga |
25242960 |
T |
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| Q |
202 |
tagatgttttgctggaaagccttc |
225 |
Q |
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| T |
25242961 |
taggtgttttgctggaaagccttc |
25242984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 40307883 - 40307798
Alignment:
| Q |
131 |
tctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaataactgatagatgttttgctgg |
216 |
Q |
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| T |
40307883 |
tctggaacctttggaaccgtgtatcatggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttgttttgctgg |
40307798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 16018553 - 16018635
Alignment:
| Q |
107 |
cttgaagagctgacagaattgggttctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaa |
189 |
Q |
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| T |
16018553 |
cttgaagagttgagggaactaggttctggtacatttgggactgtgtatcatggaaaatggagaggaacagatgttgctatcaa |
16018635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 10452017 - 10452087
Alignment:
| Q |
125 |
ttgggttctggtacctttggaactgtttatcatggaaaatggaggggaactgatgttgcaatcaagcgaat |
195 |
Q |
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| T |
10452017 |
ttgggatctggtacctatggaactgtttatcatggaaaatggcgaggaaccgatgtagccatcaagagaat |
10452087 |
T |
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