View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8148_low_3 (Length: 396)
Name: NF8148_low_3
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8148_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 14516311 - 14516417
Alignment:
| Q |
277 |
ttatccaaacaacaatgacatgtttgtaatactcagtttcaaatgataaaaactagtcgtgattgaaagagactacatgaattcttatccgaaatgttgt |
376 |
Q |
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| T |
14516311 |
ttatccaaacaacaatgacatgtttgtaatactcagtttcaaatgataaaaactagtcatgattgaaagagactacatggattcttatctgaaatgttgt |
14516410 |
T |
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| Q |
377 |
tggttat |
383 |
Q |
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| T |
14516411 |
tggttat |
14516417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 14516137 - 14516273
Alignment:
| Q |
1 |
ggattgagcgaaaagtaacataatcacaacactacagatataacagattgaacgaagaataaggaagaatgacaggctcaccgttggnnnnnnnnattgt |
100 |
Q |
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| T |
14516137 |
ggattgaatgaaaagaaacataatcacgaggctacagatataacggattgaacgaagaataaggaagaatgacaggctcaccgttggttttttttattgt |
14516236 |
T |
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| Q |
101 |
cggcggctatatgtataatataatcacattaattcaa |
137 |
Q |
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| T |
14516237 |
cggcggctatatgtataatataatcatattaattcaa |
14516273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 14532281 - 14532338
Alignment:
| Q |
96 |
attgtcggcggctatatgtataatataatcacattaattcaatactaacaatcatatt |
153 |
Q |
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| T |
14532281 |
attgtcagcggctatatataaaatatgataatattaattcaatactaacaatcatatt |
14532338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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