View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8148_low_5 (Length: 309)

Name: NF8148_low_5
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8148_low_5
NF8148_low_5
[»] chr8 (2 HSPs)
chr8 (100-254)||(25641705-25641859)
chr8 (93-196)||(6634421-6634529)
[»] chr2 (4 HSPs)
chr2 (91-254)||(31331320-31331484)
chr2 (91-254)||(31338041-31338205)
chr2 (100-254)||(30269809-30269963)
chr2 (100-150)||(44924226-44924276)
[»] chr7 (6 HSPs)
chr7 (100-254)||(4682329-4682483)
chr7 (131-196)||(26224718-26224783)
chr7 (112-196)||(26205109-26205194)
chr7 (38-98)||(4863090-4863150)
chr7 (44-98)||(4846876-4846930)
chr7 (38-98)||(4698045-4698105)
[»] chr4 (2 HSPs)
chr4 (112-254)||(8238972-8239114)
chr4 (100-231)||(53303225-53303357)
[»] chr3 (2 HSPs)
chr3 (100-169)||(7400894-7400963)
chr3 (203-254)||(7400981-7401032)
[»] chr5 (3 HSPs)
chr5 (100-196)||(7413837-7413933)
chr5 (102-196)||(5075269-5075363)
chr5 (153-196)||(37191209-37191252)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 25641859 - 25641705
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacatcag 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25641859 actacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattag 25641760  T
Q  200 ggtcactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25641759 tgtcactctttttcggtggtgtttatatcaaaacacattcatattctactgaaac 25641705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 6634529 - 6634421
Alignment:
Q  93 tgccaccactacacatacgtgttttagtaacattcat----cttgcaacacttgtttaatag-ttactaatatagagatttttctaacattttttagtaa 187  Q
    |||||| ||||||| || |||||||||||||||||||    ||||||||||||  ||||| | ||||||||||||||||||||||||||||||||| |||    
T  6634529 tgccactactacacttatgtgttttagtaacattcattcaccttgcaacacttacttaatgggttactaatatagagatttttctaacattttttaataa 6634430  T
Q  188 gtgttacat 196  Q
    |||||||||    
T  6634429 gtgttacat 6634421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 31331320 - 31331484
Alignment:
Q  91 agtgccaccactacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttct-aacattttttagtaagt 189  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31331320 agtggcactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagt 31331419  T
Q  190 gttacatcagggtcactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31331420 gttacattagtgtcactctttttcggtggtgtttatatcaaaacacattcatattctactgaaac 31331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 31338041 - 31338205
Alignment:
Q  91 agtgccaccactacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttct-aacattttttagtaagt 189  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31338041 agtggcactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagt 31338140  T
Q  190 gttacatcagggtcactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31338141 gttacattagtgtcactctttttcggtggtgtttatatcaaaacacattcatattctactgaaac 31338205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 30269963 - 30269809
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacatcag 199  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||    
T  30269963 actacacatatgtgttttagtaacattcatattgcaacacttgtttaatagttactaatatagagattttactaacattttttaataagtgttgcattag 30269864  T
Q  200 ggtcactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
       |||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  30269863 taacactctttttcggtagtgtttatatcaaaacacattcatattctactaaaac 30269809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 44924276 - 44924226
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatag 150  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44924276 actacacatatgtgttttagtaacattcatcttgcaacacttgtttaatag 44924226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 4682329 - 4682483
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacatcag 199  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4682329 actacacatatgtgttttagtaacatttatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattag 4682428  T
Q  200 ggtcactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
     |||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  4682429 tgtcactctttttcaatggtgtttatatcaaaacacattcatattctactgaaac 4682483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 26224718 - 26224783
Alignment:
Q  131 ttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacat 196  Q
    |||||||| || ||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  26224718 ttgcaacatttattttatagttactaatataaagatttctctaacattttttaataagtgttacat 26224783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 26205109 - 26205194
Alignment:
Q  112 tgttttagtaa-cattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacat 196  Q
    ||||||||||| |||||| ||||||||| ||  || ||||||||||||||  |||||| |||||||||||||| ||||| ||||||    
T  26205109 tgttttagtaaacattcaccttgcaacatttagtttatagttactaatatgaagatttctctaacattttttaataagtattacat 26205194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4863090 - 4863150
Alignment:
Q  38 ctctgcttccacgtaagaggttcattattcaaaccatagagatattcagtgagagtgccac 98  Q
    |||| |||||| |||||||||||||||| | ||||||| |||||||||  |||||||||||    
T  4863090 ctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccac 4863150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 4846930 - 4846876
Alignment:
Q  44 ttccacgtaagaggttcattattcaaaccatagagatattcagtgagagtgccac 98  Q
    |||||| ||||||||||||||| | |||||||||||| |||| ||||||| ||||    
T  4846930 ttccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccac 4846876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 4698105 - 4698045
Alignment:
Q  38 ctctgcttccacgtaagaggttcattattcaaaccatagagatattcagtgagagtgccac 98  Q
    |||| |||||| ||||||||||| |||| | |||||||||||||||||   ||||||||||    
T  4698105 ctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccac 4698045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 8239114 - 8238972
Alignment:
Q  112 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacatcagggtcactctttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||   |||||||||    
T  8239114 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttaataagtgttgcattagtaacactctttt 8239015  T
Q  212 tcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  8239014 tcggtagtgtttatatcaaaacacattcatattctactaaaac 8238972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 53303357 - 53303225
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaa-tagttactaatatagagatttttctaacattttttagtaagtgttacatca 198  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  53303357 actacacatatgtgttttagtaacatttatcttgcaacacttgtttaagtagttactaatatagagatttttctaacattttttaataagtgttgcatta 53303258  T
Q  199 gggtcactctttttcggtggtctttatatcaaa 231  Q
    |   |||||||||||||| || |||||||||||    
T  53303257 gtaacactctttttcggtagtgtttatatcaaa 53303225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 7400894 - 7400963
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttt 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7400894 actacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttt 7400963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 7400981 - 7401032
Alignment:
Q  203 cactctttttcggtggtctttatatcaaaacacattcatattctactgaaac 254  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||| ||||    
T  7400981 cactctttttcggtagtgtttatatcaaaacacattcatcttctactaaaac 7401032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 7413933 - 7413837
Alignment:
Q  100 actacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacat 196  Q
    ||||||| || |||||||||||||||||| ||| ||||||||  ||||| |||| ||||||||| ||||||||||| ||||||| ||||||||||||    
T  7413933 actacacttatgtgttttagtaacattcaccttacaacacttacttaatggttattaatatagaaatttttctaaccttttttaataagtgttacat 7413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 5075269 - 5075363
Alignment:
Q  102 tacacatacgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacat 196  Q
    ||||| || |||||||| ||||||||| ||||||||||||  ||||| ||||| |||||| |||||||||||||||||||||  |||||||||||    
T  5075269 tacacttatgtgttttaataacattcaccttgcaacacttacttaatggttaccaatataaagatttttctaacattttttaagaagtgttacat 5075363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 37191252 - 37191209
Alignment:
Q  153 actaatatagagatttttctaacattttttagtaagtgttacat 196  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  37191252 actaatatagagatttttttaacattttttaataagtgttacat 37191209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University