View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8148_low_7 (Length: 277)
Name: NF8148_low_7
Description: NF8148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8148_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 54347316 - 54347577
Alignment:
| Q |
1 |
gaccgtcaattggtctcatgaatgagactaataataacctgaacagttttagccaaccccattattataaattattgcaacataatgcatatatattatg |
100 |
Q |
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| T |
54347316 |
gaccatcaattggtctcatgaatgagactaataataacctgaacagttttagccaaccccattattataaattattgcaacataatgcatatatattatg |
54347415 |
T |
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| Q |
101 |
gaaaatagtcttaagtggacaagagacacagtgataaggacgtttctgagagagagtggatactttacaatgctatataagcacgccagctgcgtctttg |
200 |
Q |
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| T |
54347416 |
gaaaatagtcttaagtggacaagagacacagtgataaggacgtttctgagagagagtggatactttacaatgctatataagcacgccagctgcgtctttg |
54347515 |
T |
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| Q |
201 |
gttcagcattatatatatttgcaagctgatcaaactccatctatctatttatctatcaaacctgatgtc |
269 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
54347516 |
gttcagcat------tatttgcaagctgatcaaaccccatctatctatttatctat-aaacctgttgtc |
54347577 |
T |
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