View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8149_high_3 (Length: 508)

Name: NF8149_high_3
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8149_high_3
NF8149_high_3
[»] chr8 (4 HSPs)
chr8 (1-486)||(25131449-25131930)
chr8 (194-238)||(39531150-39531194)
chr8 (192-226)||(36406640-36406674)
chr8 (192-226)||(24964975-24965009)
[»] chr1 (10 HSPs)
chr1 (295-492)||(13569831-13570030)
chr1 (232-492)||(10802257-10802516)
chr1 (192-253)||(44305354-44305415)
chr1 (192-251)||(37154104-37154163)
chr1 (196-244)||(6331620-6331668)
chr1 (195-226)||(8239224-8239255)
chr1 (192-226)||(14727260-14727294)
chr1 (192-226)||(25007406-25007440)
chr1 (192-226)||(27584152-27584186)
chr1 (415-488)||(11843991-11844068)
[»] scaffold0170 (1 HSPs)
scaffold0170 (295-492)||(7729-7923)
[»] chr3 (10 HSPs)
chr3 (184-238)||(31985751-31985805)
chr3 (194-238)||(43585081-43585125)
chr3 (192-226)||(44625646-44625680)
chr3 (192-223)||(7500883-7500914)
chr3 (195-226)||(37516581-37516612)
chr3 (195-226)||(53651849-53651880)
chr3 (195-238)||(53707111-53707154)
chr3 (192-226)||(25391963-25391997)
chr3 (192-226)||(44047532-44047566)
chr3 (441-493)||(53707339-53707394)
[»] chr7 (2 HSPs)
chr7 (192-226)||(35300579-35300613)
chr7 (194-238)||(27388119-27388163)
[»] chr6 (3 HSPs)
chr6 (192-226)||(10397931-10397965)
chr6 (192-226)||(23663898-23663932)
chr6 (195-226)||(9695989-9696020)
[»] chr5 (7 HSPs)
chr5 (192-226)||(30248907-30248941)
chr5 (192-226)||(34443908-34443942)
chr5 (192-226)||(34846297-34846331)
chr5 (194-226)||(2476348-2476380)
chr5 (195-226)||(15675246-15675277)
chr5 (195-226)||(35468835-35468866)
chr5 (194-226)||(33006839-33006871)
[»] chr4 (8 HSPs)
chr4 (195-253)||(1585655-1585713)
chr4 (192-226)||(10715597-10715631)
chr4 (192-226)||(10929367-10929401)
chr4 (192-225)||(2017577-2017610)
chr4 (194-226)||(4552130-4552162)
chr4 (195-226)||(31364081-31364112)
chr4 (195-226)||(32005860-32005891)
chr4 (195-232)||(40969170-40969207)
[»] chr2 (2 HSPs)
chr2 (192-226)||(13203710-13203744)
chr2 (195-226)||(41115008-41115039)
[»] scaffold0001 (1 HSPs)
scaffold0001 (447-492)||(141538-141583)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 25131930 - 25131449
Alignment:
Q  1 aaatacattattattttacagacacttccttaggtacaacactacgcaacttattctatactacctaaacctcctttccttgatatccttcttcagcaca 100  Q
    |||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25131930 aaatacatgattattttactgacacttccttaggtataacattacgcaacttattctatactacctaaacctcctttccttgatatccttcttcagcaaa 25131831  T
Q  101 atcaattttgacctcttttcaggccattctgcctcctgcatcccacccactctgctggcccacgtgcactagccatgaacatgggcgattacacccccca 200  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131830 atcaattttgacctcttttcaggccattctgcct---gcatcccacccactctgctggcccacgtgcactagccatgaacatgggcgattacacccccca 25131734  T
Q  201 gctagcctgggctagtgcccaggctctgcttctgctttctatgttggaagcccagtccaatagccatattctttacttnnnnnnnnnnnnnnnnggggca 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||                 |||||    
T  25131733 gctagcctgggctagtgcccaggctctgcttctgctttcaatgttggaagcccaacccaatagccatattctttacttaaaaaaaaaaaaacc--gggca 25131636  T
Q  301 aaattgaggcaaatgttaaggtgtgtaaaaatgttatatttttcggtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctct 400  Q
    ||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  25131635 aaattgaggcaaatgttcaggcgtgtaaaaatg-tctatttttcagtcttctccttctctaacttatagtgactctccctctctcagtgactcaatctct 25131537  T
Q  401 gtttcaatttcatatcattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttct 486  Q
    |||||| |||||||||||||  || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25131536 gtttcagtttcatatcatttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccttct 25131449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 39531150 - 39531194
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctctgcttctgcttt 238  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  39531150 ccccccagctagcctgggctagtgcccaggctctacttctacttt 39531194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 36406674 - 36406640
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  36406674 caccccccagctagcctgggctagtgcccaggctc 36406640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 24964975 - 24965009
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||| ||||||||||||||||||||||||||||||    
T  24964975 caccacccagctagcctgggctagtgcccaggctc 24965009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 295 - 492
Target Start/End: Complemental strand, 13570030 - 13569831
Alignment:
Q  295 ggggcaaaattgaggcaaatgttaaggtgtgtaaaaatgttatatttttcggtcttctccttctctaacttatcgtgactctcccactctcagtgactca 394  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  13570030 ggggcaaaattgaggcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactca 13569931  T
Q  395 atctctgtttcaatttcatatcattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctctt 492  Q
    |||||| |||||||||||||||||||  || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  13569930 atctctatttcaatttcatatcatttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccctctcctctt 13569831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 232 - 492
Target Start/End: Complemental strand, 10802516 - 10802257
Alignment:
Q  232 ctgctttctatgttggaagcccagtccaatagccatattctttacttnnnnnnnnnnnnnnnng-gggcaaaattgaggcaaatgttaaggtgtgtaaaa 330  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||                  |||||||||||||||||||||| ||  ||||||||    
T  10802516 ctgctttctatgttggaagcccagcccaatagccatattctttacttaaaaaaaaataaaaaaatgggcaaaattgaggcaaatgttcagc-gtgtaaaa 10802418  T
Q  331 atgttatatttttcggtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaatttcatatcatttgcttctccct 430  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||  || || |||||||||||||||||||||||    
T  10802417 atgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactcaatctcaatt-cagtttcatatcatttgcttctccct 10802319  T
Q  431 ctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctctt 492  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10802318 ctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccttctcctctt 10802257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 44305354 - 44305415
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctctgcttctgctttctatgttggaagccc 253  Q
    ||||||||||||||||||||||||||||||||||| ||| |  |||||| ||| ||||||||    
T  44305354 caccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagccc 44305415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 37154163 - 37154104
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctctgcttctgctttctatgttggaagc 251  Q
    ||||||||||||||||||||||||||||||||||| ||| |  |||||| ||| ||||||    
T  37154163 caccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagc 37154104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 6331620 - 6331668
Alignment:
Q  196 ccccagctagcctgggctagtgcccaggctctgcttctgctttctatgt 244  Q
    ||||||||||||||||||||||||||||||| ||| |  ||||||||||    
T  6331620 ccccagctagcctgggctagtgcccaggctcggctccaactttctatgt 6331668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 8239224 - 8239255
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  8239224 cccccagctagcctgggctagtgcccaggctc 8239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 14727260 - 14727294
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||| |||||||||||||||||||||||||||    
T  14727260 cacccccaagctagcctgggctagtgcccaggctc 14727294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 25007406 - 25007440
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||| |||||||||||    
T  25007406 caccccccagctagcctgggctaatgcccaggctc 25007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 27584186 - 27584152
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||| ||||||||||    
T  27584186 caccccccagctagcctgggctagcgcccaggctc 27584152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 11844068 - 11843991
Alignment:
Q  415 tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagt----ctccattgtcattccttctcc 488  Q
    |||||||| ||||||| ||| || |||||||||  |||||||||||||| |||    ||||||| |||||||||||||    
T  11844068 tcatttgcctctccctatctcaacttgcgcctcaccctctctcaactctcagtctgcctccattttcattccttctcc 11843991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 295 - 492
Target Start/End: Original strand, 7729 - 7923
Alignment:
Q  295 ggggcaaaattgaggcaaatgttaaggtgtg--taaaaatgttatatttttcggtcttctccttctctaacttatcgtgactctcccactctcagtgact 392  Q
    |||||| |||||||||||||||| ||| | |  || |||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  7729 ggggcagaattgaggcaaatgttcaggcgcgcatacaaattttctatttttcggtcttctccttctctaacttaacgtgactctccctctctcagtgact 7828  T
Q  393 caatctctgtttcaatttcatatcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctctt 492  Q
    |||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  7829 caatctctgtttcagtt-----tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactctcagtctccattttcattcctcctcctctt 7923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 31985751 - 31985805
Alignment:
Q  184 ggcgattacaccccccagctagcctgggctagtgcccaggctctgcttctgcttt 238  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  31985751 ggcgactacaccccccagctagcctgggctggtgcccgggctctgcttctacttt 31985805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 43585081 - 43585125
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctctgcttctgcttt 238  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  43585081 ccccccagctagcctgggctagtgcccgggctcagcttctgcttt 43585125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 44625646 - 44625680
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  44625646 caccccccagctagcctgggctagtgcccaggctc 44625680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 7500883 - 7500914
Alignment:
Q  192 caccccccagctagcctgggctagtgcccagg 223  Q
    ||||||||||||||||||||||||||||||||    
T  7500883 caccccccagctagcctgggctagtgcccagg 7500914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 37516581 - 37516612
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  37516581 cccccagctagcctgggctagtgcccaggctc 37516612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 53651849 - 53651880
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  53651849 cccccagctagcctgggctagtgcccaggctc 53651880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 53707111 - 53707154
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctctgcttctgcttt 238  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||    
T  53707111 cccccagctagcctgggctaatgcccgggctctgcttctacttt 53707154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 25391997 - 25391963
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||| |||||||||||    
T  25391997 caccccccagctagcctgggctaatgcccaggctc 25391963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 44047532 - 44047566
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||| |||||||||    
T  44047532 caccccccagctagcctgggctagtacccaggctc 44047566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 53707339 - 53707394
Alignment:
Q  441 gcgcctcttcctctctcaactcttagtctc---cattgtcattccttctcctcttt 493  Q
    |||||||| |||||||||||||| ||||||   |||| ||||||||||||||||||    
T  53707339 gcgcctctccctctctcaactctcagtctcggtcattttcattccttctcctcttt 53707394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 35300613 - 35300579
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  35300613 caccccccagctagcctgggctagtgcccaggctc 35300579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 27388163 - 27388119
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctctgcttctgcttt 238  Q
    |||||||||||| ||||||| |||||| |||||||||||| ||||    
T  27388163 ccccccagctagtctgggctggtgcccgggctctgcttctacttt 27388119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 10397965 - 10397931
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  10397965 caccccccagctagcctgggctagtgcccaggctc 10397931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 23663932 - 23663898
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  23663932 caccccccagctagcctgggctagtgcccaggctc 23663898  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 9695989 - 9696020
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  9695989 cccccagctagcctgggctagtgcccaggctc 9696020  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 30248907 - 30248941
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  30248907 caccccccagctagcctgggctagtgcccaggctc 30248941  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 34443908 - 34443942
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  34443908 caccccccagctagcctgggctagtgcccaggctc 34443942  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 34846297 - 34846331
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  34846297 caccccccagctagcctgggctagtgcccaggctc 34846331  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 2476348 - 2476380
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||    
T  2476348 ccccccagctagcctgggctagtgcccaggctc 2476380  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 15675246 - 15675277
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  15675246 cccccagctagcctgggctagtgcccaggctc 15675277  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 35468835 - 35468866
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  35468835 cccccagctagcctgggctagtgcccaggctc 35468866  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 33006839 - 33006871
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||| |||||||||||    
T  33006839 ccccccagctagcctgggctaatgcccaggctc 33006871  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 1585655 - 1585713
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctctgcttctgctttctatgttggaagccc 253  Q
    |||||||||||||||||||||||||||||||| |||||  |||||| ||| | ||||||    
T  1585655 cccccagctagcctgggctagtgcccaggctcagcttcaactttctttgtagcaagccc 1585713  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 10715597 - 10715631
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  10715597 caccccccagctagcctgggctagtgcccaggctc 10715631  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 10929367 - 10929401
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  10929367 caccccccagctagcctgggctagtgcccaggctc 10929401  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 2017610 - 2017577
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggct 225  Q
    ||||||||||||||||||||||||||||||||||    
T  2017610 caccccccagctagcctgggctagtgcccaggct 2017577  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 4552130 - 4552162
Alignment:
Q  194 ccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||    
T  4552130 ccccccagctagcctgggctagtgcccaggctc 4552162  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 31364081 - 31364112
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  31364081 cccccagctagcctgggctagtgcccaggctc 31364112  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 32005860 - 32005891
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  32005860 cccccagctagcctgggctagtgcccaggctc 32005891  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 40969170 - 40969207
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctctgcttc 232  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  40969170 cccccagctagcctgggctagtgctcaggctcagcttc 40969207  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 13203710 - 13203744
Alignment:
Q  192 caccccccagctagcctgggctagtgcccaggctc 226  Q
    |||||||||||||||||||||||||||||||||||    
T  13203710 caccccccagctagcctgggctagtgcccaggctc 13203744  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 41115039 - 41115008
Alignment:
Q  195 cccccagctagcctgggctagtgcccaggctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  41115039 cccccagctagcctgggctagtgcccaggctc 41115008  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 447 - 492
Target Start/End: Original strand, 141538 - 141583
Alignment:
Q  447 cttcctctctcaactcttagtctccattgtcattccttctcctctt 492  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||    
T  141538 cttcctctgtcaactcttcgtctccattttcattccttctcctctt 141583  T

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