View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8149_high_6 (Length: 312)

Name: NF8149_high_6
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8149_high_6
NF8149_high_6
[»] chr5 (10 HSPs)
chr5 (18-251)||(38783814-38784047)
chr5 (18-179)||(35181991-35182152)
chr5 (18-175)||(19242376-19242533)
chr5 (18-175)||(9211371-9211528)
chr5 (20-175)||(12560131-12560287)
chr5 (18-175)||(9369957-9370114)
chr5 (24-148)||(12556892-12557016)
chr5 (280-312)||(21594389-21594421)
chr5 (280-312)||(21598506-21598538)
chr5 (276-308)||(33412121-33412153)
[»] chr8 (4 HSPs)
chr8 (18-175)||(9937274-9937431)
chr8 (18-179)||(9939646-9939807)
chr8 (17-176)||(9945693-9945855)
chr8 (275-308)||(6833818-6833851)
[»] chr1 (6 HSPs)
chr1 (18-179)||(5050497-5050658)
chr1 (17-179)||(1466764-1466926)
chr1 (19-175)||(35923229-35923385)
chr1 (270-312)||(16475906-16475948)
chr1 (270-303)||(30799257-30799290)
chr1 (280-312)||(27785971-27786003)
[»] chr4 (3 HSPs)
chr4 (18-175)||(44089675-44089832)
chr4 (22-174)||(38052049-38052200)
chr4 (73-147)||(7672373-7672446)
[»] chr3 (8 HSPs)
chr3 (18-192)||(28838366-28838540)
chr3 (18-177)||(9450692-9450851)
chr3 (18-177)||(17724541-17724700)
chr3 (18-177)||(19025770-19025929)
chr3 (18-175)||(28830418-28830575)
chr3 (19-175)||(26640709-26640865)
chr3 (18-174)||(20798757-20798912)
chr3 (270-308)||(8136625-8136663)
[»] chr7 (8 HSPs)
chr7 (19-179)||(19538751-19538911)
chr7 (18-177)||(19545404-19545563)
chr7 (18-172)||(47228521-47228675)
chr7 (18-141)||(47465706-47465829)
chr7 (32-96)||(19555017-19555081)
chr7 (18-96)||(19549805-19549883)
chr7 (39-96)||(19551972-19552029)
chr7 (270-306)||(21554927-21554963)
[»] chr2 (4 HSPs)
chr2 (127-175)||(7959615-7959663)
chr2 (20-68)||(43924058-43924105)
chr2 (270-307)||(4138022-4138059)
chr2 (276-312)||(37830739-37830775)
[»] chr6 (1 HSPs)
chr6 (270-308)||(3808111-3808149)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38783814 - 38784047
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38783814 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacttaaggtgttctc 38783913  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcgattgtagttcaaacttttgatgtcattgtctttaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||| | | ||||     
T  38783914 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaattatagtccaaatttttgatgtcattttttctaaac 38784013  T
Q  218 taccatgttcttaagttttggttaatttatgttg 251  Q
     |||||||| |||||||||||| |||||||||||    
T  38784014 gaccatgttattaagttttggtcaatttatgttg 38784047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 35181991 - 35182152
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||||    
T  35181991 atacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttctc 35182090  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182091 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 35182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 19242533 - 19242376
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||    ||||||| | | |    
T  19242533 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgctagtctaaggtctaccc 19242434  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  19242433 aagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggcccc 19242376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 9211528 - 9211371
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||||||   ||||||| |||||||||| | || |||||   |||||||| | | |    
T  9211528 atacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctaccc 9211429  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211428 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 9211371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 12560131 - 12560287
Alignment:
Q  20 acttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgt-tctca 118  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||| ||||||||||   |||||||| |  | ||    
T  12560131 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca 12560230  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   |||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  12560231 agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagcccc 12560287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 9369957 - 9370114
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||||||||| | ||||||||   |||||||| | | |    
T  9369957 atacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctaccc 9370056  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   ||||||||||||||| |||||  || ||||| |||||||||||||||||    
T  9370057 aagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccc 9370114  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
Q  24 acctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagtag 123  Q
    ||||||||||||||||| | ||||||||||||  ||| ||||| |    ||||||||||||||||| ||||||||||   |||||||| | ||||||| |    
T  12556892 acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg 12556991  T
Q  124 aacagcctacatcataatttgttgc 148  Q
       ||||||||||||||||||||||    
T  12556992 tggagcctacatcataatttgttgc 12557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 21594389 - 21594421
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||| ||||||||||||||||||||||||||    
T  21594389 tttgaaccttggaccttgcatatattatgtatt 21594421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 21598506 - 21598538
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||| ||||||||||||||||||||||||||    
T  21598506 tttgaaccttggaccttgcatatattatgtatt 21598538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 33412153 - 33412121
Alignment:
Q  276 ggggtttgaatcttggaccttgcatatattatg 308  Q
    |||||||||||| ||||||||||||||||||||    
T  33412153 ggggtttgaatcctggaccttgcatatattatg 33412121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 9937274 - 9937431
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  9937274 atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc 9937373  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9937374 aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggcccc 9937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 9939646 - 9939807
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9939646 atacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttctc 9939745  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9939746 aagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccctcttc 9939807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 9945693 - 9945855
Alignment:
Q  17 aatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttct 116  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  9945693 aatacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttct 9945792  T
Q  117 caagtagaa---cagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc 176  Q
    |||||||||   |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  9945793 caagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc 9945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 6833818 - 6833851
Alignment:
Q  275 tggggtttgaatcttggaccttgcatatattatg 308  Q
    ||||||||||| ||||||||||||||||||||||    
T  6833818 tggggtttgaaccttggaccttgcatatattatg 6833851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 5050658 - 5050497
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  5050658 atacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgttctc 5050559  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050558 aagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 5050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 1466764 - 1466926
Alignment:
Q  17 aatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttct 116  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||   |||||| |||||||||||||||||||||||||  ||||||| | |     
T  1466764 aatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggaggggtgcctttctaaggtctacc 1466863  T
Q  117 caagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1466864 caagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 1466926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 35923229 - 35923385
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||   ||||||||||||||||||||||||||||| | |||||||| | | ||    
T  35923229 tacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgcttgcctaaggtctaccca 35923328  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35923329 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 35923385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 16475906 - 16475948
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  16475906 gtggttggggtttgaaccttggaccttacatatattatgtatt 16475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 30799257 - 30799290
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatata 303  Q
    ||||||||||||||||||| ||||||||||||||    
T  30799257 gtggttggggtttgaatctcggaccttgcatata 30799290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 27785971 - 27786003
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||||| ||||||||||||||||||||||||    
T  27785971 tttgaatcctggaccttgcatatattatgtatt 27786003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 44089675 - 44089832
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||| |||  |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  44089675 atacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttctc 44089774  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  44089775 aagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc 44089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 38052049 - 38052200
Alignment:
Q  22 ttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagt 121  Q
    |||| |||||| |||||||| | || ||||| ||||||||| ||||||||||||||||||||||| ||||||||||    || |||||||||||||||||    
T  38052049 ttacttggatgaggtcaatgaacgaccaaga-ggtccatggtctaggttggtgacctccattgcatttaggaggggcttgtatctaaggtgttctcaagt 38052147  T
Q  122 agaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 174  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  38052148 agaacaacctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc 38052200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 7672446 - 7672373
Alignment:
Q  73 tgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagtagaacagcctacatcataatttgttg 147  Q
    |||||||||||||||||  ||||||||||  |||||||||||||| | ||||||| |||||||||||||||||||    
T  7672446 tgacctccattgcacttcagaggggtgccg-cctaaggtgttctcgaatagaacaacctacatcataatttgttg 7672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 28838540 - 28838366
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  ||||||| | | |    
T  28838540 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacttaggaggggtgcctttctaaggtctaccc 28838441  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcgattgtagttcaa 192  Q
    |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  28838440 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaattttagttcaa 28838366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 9450692 - 9450851
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||| |||||||| | | |    
T  9450692 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcactttggaggggtgccttcctaaggtctaccc 9450791  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450792 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 9450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 17724541 - 17724700
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| | | |    
T  17724541 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctaccc 17724640  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17724641 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 17724700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 19025770 - 19025929
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| | | |    
T  19025770 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctaccc 19025869  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19025870 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19025929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 28830575 - 28830418
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |  ||||||| | | |    
T  28830575 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggaggggtgcttttctaaggtctaccc 28830476  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28830475 aagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggcccc 28830418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 26640709 - 26640865
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||||    |||||||||||||||||||||||||||||    ||||||| | | ||    
T  26640709 tacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtctaccca 26640808  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   | |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26640809 agtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc 26640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 20798912 - 20798757
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||   ||||||||||||||||||||||  |||||   |||||||| | | |    
T  20798912 atacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctaccc 20798813  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 174  Q
    |||| |   |||||||||||||||||||||| |  ||||| ||||||||||| ||||    
T  20798812 aagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc 20798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 8136625 - 8136663
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatg 308  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  8136625 gtggtcggggtttgaaccttggaccttgcatatattatg 8136663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19538911 - 19538751
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||   |||||||||||||||||| ||||||||||   |||||||| | |  |    
T  19538911 tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta 19538812  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19538811 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 19538751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 19545563 - 19545404
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||    |||||||||||||||||| ||||||||||    ||||||| | | |    
T  19545563 atacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctaccc 19545464  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545463 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 47228521 - 47228675
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||   |||||||||||||||||||||||||||||  |  ||||||| |   |    
T  47228521 atacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctatcc 47228620  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc 172  Q
    |||| |   ||||||||| |||||||||||||| ||||| |||||||||||||||    
T  47228621 aagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 47465829 - 47465706
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||   |||| |||||||||||||| |||||||||| |  ||||||| | |||    
T  47465829 atacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctactc 47465730  T
Q  118 aagtagaacagcctacatcataat 141  Q
    |||| |   |||||||||||||||    
T  47465729 aagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 19555081 - 19555017
Alignment:
Q  32 ggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    ||||||||||||||||||| |||||||||| |||||    || ||||||||||||||||||||||    
T  19555081 ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggaggg 19555017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 19549883 - 19549805
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    |||| |||||||| ||||||||||| ||||||| |||| ||||| |||||    ||||| |||||||||||||||||||    
T  19549883 atacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggaggg 19549805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
Q  39 atggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    |||| |||||||||||| ||||| |||||    |||||||||||||||||||||||||    
T  19552029 atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg 19551972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 21554927 - 21554963
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatatta 306  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  21554927 gtggtcggggtttgaatcctggaccttgcatatatta 21554963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 7959663 - 7959615
Alignment:
Q  127 agcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7959663 agcctacatcataatttgttgctgtgggggtctgcgttcgcgcggcccc 7959615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 43924105 - 43924058
Alignment:
Q  20 acttacctggatggggtcaatggatgatcaagaaggtccatggcctagg 68  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  43924105 acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctagg 43924058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 4138059 - 4138022
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattat 307  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  4138059 gtggtcggggtttgaatctcggaccttgcatatattat 4138022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 37830775 - 37830739
Alignment:
Q  276 ggggtttgaatcttggaccttgcatatattatgtatt 312  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  37830775 ggggtttgaatcttggatcttgtatatattatgtatt 37830739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 3808111 - 3808149
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatg 308  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  3808111 gtggctggggtttgaatctcggaccttgcatatattatg 3808149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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