View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_high_9 (Length: 206)
Name: NF8149_high_9
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_high_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 28615958 - 28615766
Alignment:
| Q |
14 |
ttttttattggttaaatattaaaacatcatgtgaaacatgggtgagattccaacttcatatcagttacttggtacgcagcatgacaatcacaatcagatc |
113 |
Q |
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| T |
28615958 |
ttttttattggttaaatattaaaacatcatgtgaaacatgggtgagattccaacatcatatcagttacttggtacgcagcatgacaatcacaatcagatc |
28615859 |
T |
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| Q |
114 |
agaatggcctgtggacacggaaataacaaacaggtgatgaaaccaaacttagcaagcattaaaggatacgatcgatataattgaatggataat |
206 |
Q |
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| T |
28615858 |
agaatggcctgtaggcacggaaataacaagcaggtgatgaaaccaaacttagcaagcattaaaggatacgatcgatataattgaatggataat |
28615766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 28618115 - 28617929
Alignment:
| Q |
14 |
ttttttattggttaaatattaaaacatcatgtgaaacatgggtgagattccaacttcatatcagttacttggtacgcagcatgacaatcacaatcagatc |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
28618115 |
ttttttattgcttaaatattaaaacatcatgtgaaatatgggtgagattccaacttcttctgagttacttggtacgcagcatgacaatcacaatcagatc |
28618016 |
T |
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| Q |
114 |
agaatggcctgtggacacggaaataacaaacaggtgatgaaaccaaacttagcaagcattaaaggatacgatcgatataattgaatg |
200 |
Q |
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| T |
28618015 |
agaatggcctgtaggcacggaaataacaaacaggtgatgaaaccaaacttagaaagcattaaaagatacgattgatacaattgaatg |
28617929 |
T |
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