View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8149_low_12 (Length: 312)

Name: NF8149_low_12
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8149_low_12
NF8149_low_12
[»] chr5 (10 HSPs)
chr5 (18-251)||(38783814-38784047)
chr5 (18-179)||(35181991-35182152)
chr5 (18-175)||(19242376-19242533)
chr5 (18-175)||(9211371-9211528)
chr5 (20-175)||(12560131-12560287)
chr5 (18-175)||(9369957-9370114)
chr5 (24-148)||(12556892-12557016)
chr5 (280-312)||(21594389-21594421)
chr5 (280-312)||(21598506-21598538)
chr5 (276-308)||(33412121-33412153)
[»] chr8 (4 HSPs)
chr8 (18-175)||(9937274-9937431)
chr8 (18-179)||(9939646-9939807)
chr8 (17-176)||(9945693-9945855)
chr8 (275-308)||(6833818-6833851)
[»] chr1 (6 HSPs)
chr1 (18-179)||(5050497-5050658)
chr1 (17-179)||(1466764-1466926)
chr1 (19-175)||(35923229-35923385)
chr1 (270-312)||(16475906-16475948)
chr1 (270-303)||(30799257-30799290)
chr1 (280-312)||(27785971-27786003)
[»] chr4 (3 HSPs)
chr4 (18-175)||(44089675-44089832)
chr4 (22-174)||(38052049-38052200)
chr4 (73-147)||(7672373-7672446)
[»] chr3 (8 HSPs)
chr3 (18-192)||(28838366-28838540)
chr3 (18-177)||(9450692-9450851)
chr3 (18-177)||(17724541-17724700)
chr3 (18-177)||(19025770-19025929)
chr3 (18-175)||(28830418-28830575)
chr3 (19-175)||(26640709-26640865)
chr3 (18-174)||(20798757-20798912)
chr3 (270-308)||(8136625-8136663)
[»] chr7 (8 HSPs)
chr7 (19-179)||(19538751-19538911)
chr7 (18-177)||(19545404-19545563)
chr7 (18-172)||(47228521-47228675)
chr7 (18-141)||(47465706-47465829)
chr7 (32-96)||(19555017-19555081)
chr7 (18-96)||(19549805-19549883)
chr7 (39-96)||(19551972-19552029)
chr7 (270-306)||(21554927-21554963)
[»] chr2 (4 HSPs)
chr2 (127-175)||(7959615-7959663)
chr2 (20-68)||(43924058-43924105)
chr2 (270-307)||(4138022-4138059)
chr2 (276-312)||(37830739-37830775)
[»] chr6 (1 HSPs)
chr6 (270-308)||(3808111-3808149)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38783814 - 38784047
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38783814 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacttaaggtgttctc 38783913  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcgattgtagttcaaacttttgatgtcattgtctttaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||| | | ||||     
T  38783914 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaattatagtccaaatttttgatgtcattttttctaaac 38784013  T
Q  218 taccatgttcttaagttttggttaatttatgttg 251  Q
     |||||||| |||||||||||| |||||||||||    
T  38784014 gaccatgttattaagttttggtcaatttatgttg 38784047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 35181991 - 35182152
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||||    
T  35181991 atacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttctc 35182090  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182091 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 35182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 19242533 - 19242376
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||    ||||||| | | |    
T  19242533 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgctagtctaaggtctaccc 19242434  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  19242433 aagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggcccc 19242376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 9211528 - 9211371
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||||||   ||||||| |||||||||| | || |||||   |||||||| | | |    
T  9211528 atacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctaccc 9211429  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211428 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 9211371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 12560131 - 12560287
Alignment:
Q  20 acttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgt-tctca 118  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||| ||||||||||   |||||||| |  | ||    
T  12560131 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca 12560230  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   |||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  12560231 agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagcccc 12560287  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 9369957 - 9370114
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||||||||| | ||||||||   |||||||| | | |    
T  9369957 atacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctaccc 9370056  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   ||||||||||||||| |||||  || ||||| |||||||||||||||||    
T  9370057 aagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccc 9370114  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
Q  24 acctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagtag 123  Q
    ||||||||||||||||| | ||||||||||||  ||| ||||| |    ||||||||||||||||| ||||||||||   |||||||| | ||||||| |    
T  12556892 acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg 12556991  T
Q  124 aacagcctacatcataatttgttgc 148  Q
       ||||||||||||||||||||||    
T  12556992 tggagcctacatcataatttgttgc 12557016  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 21594389 - 21594421
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||| ||||||||||||||||||||||||||    
T  21594389 tttgaaccttggaccttgcatatattatgtatt 21594421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 21598506 - 21598538
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||| ||||||||||||||||||||||||||    
T  21598506 tttgaaccttggaccttgcatatattatgtatt 21598538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 33412153 - 33412121
Alignment:
Q  276 ggggtttgaatcttggaccttgcatatattatg 308  Q
    |||||||||||| ||||||||||||||||||||    
T  33412153 ggggtttgaatcctggaccttgcatatattatg 33412121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 9937274 - 9937431
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  9937274 atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc 9937373  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9937374 aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggcccc 9937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 9939646 - 9939807
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9939646 atacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttctc 9939745  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9939746 aagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccctcttc 9939807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 9945693 - 9945855
Alignment:
Q  17 aatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttct 116  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  9945693 aatacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttct 9945792  T
Q  117 caagtagaa---cagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc 176  Q
    |||||||||   |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  9945793 caagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc 9945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 6833818 - 6833851
Alignment:
Q  275 tggggtttgaatcttggaccttgcatatattatg 308  Q
    ||||||||||| ||||||||||||||||||||||    
T  6833818 tggggtttgaaccttggaccttgcatatattatg 6833851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 5050658 - 5050497
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  5050658 atacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgttctc 5050559  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050558 aagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 5050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 1466764 - 1466926
Alignment:
Q  17 aatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttct 116  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||   |||||| |||||||||||||||||||||||||  ||||||| | |     
T  1466764 aatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggaggggtgcctttctaaggtctacc 1466863  T
Q  117 caagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1466864 caagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 1466926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 35923229 - 35923385
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||   ||||||||||||||||||||||||||||| | |||||||| | | ||    
T  35923229 tacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgcttgcctaaggtctaccca 35923328  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35923329 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 35923385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 16475906 - 16475948
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  16475906 gtggttggggtttgaaccttggaccttacatatattatgtatt 16475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 30799257 - 30799290
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatata 303  Q
    ||||||||||||||||||| ||||||||||||||    
T  30799257 gtggttggggtttgaatctcggaccttgcatata 30799290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 27785971 - 27786003
Alignment:
Q  280 tttgaatcttggaccttgcatatattatgtatt 312  Q
    |||||||| ||||||||||||||||||||||||    
T  27785971 tttgaatcctggaccttgcatatattatgtatt 27786003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 44089675 - 44089832
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    |||||||||||||||||||| |||  |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  44089675 atacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttctc 44089774  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  44089775 aagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc 44089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 38052049 - 38052200
Alignment:
Q  22 ttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagt 121  Q
    |||| |||||| |||||||| | || ||||| ||||||||| ||||||||||||||||||||||| ||||||||||    || |||||||||||||||||    
T  38052049 ttacttggatgaggtcaatgaacgaccaaga-ggtccatggtctaggttggtgacctccattgcatttaggaggggcttgtatctaaggtgttctcaagt 38052147  T
Q  122 agaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 174  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  38052148 agaacaacctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc 38052200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 7672446 - 7672373
Alignment:
Q  73 tgacctccattgcacttaggaggggtgcctacctaaggtgttctcaagtagaacagcctacatcataatttgttg 147  Q
    |||||||||||||||||  ||||||||||  |||||||||||||| | ||||||| |||||||||||||||||||    
T  7672446 tgacctccattgcacttcagaggggtgccg-cctaaggtgttctcgaatagaacaacctacatcataatttgttg 7672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 28838540 - 28838366
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  ||||||| | | |    
T  28838540 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacttaggaggggtgcctttctaaggtctaccc 28838441  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcgattgtagttcaa 192  Q
    |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  28838440 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaattttagttcaa 28838366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 9450692 - 9450851
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||| |||||||| | | |    
T  9450692 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcactttggaggggtgccttcctaaggtctaccc 9450791  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450792 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 9450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 17724541 - 17724700
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| | | |    
T  17724541 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctaccc 17724640  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17724641 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 17724700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 19025770 - 19025929
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| | | |    
T  19025770 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctaccc 19025869  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19025870 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19025929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 28830575 - 28830418
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |  ||||||| | | |    
T  28830575 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggaggggtgcttttctaaggtctaccc 28830476  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||| |   ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28830475 aagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggcccc 28830418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 26640709 - 26640865
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||||    |||||||||||||||||||||||||||||    ||||||| | | ||    
T  26640709 tacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtctaccca 26640808  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    ||| |   | |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26640809 agtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc 26640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 20798912 - 20798757
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||   ||||||||||||||||||||||  |||||   |||||||| | | |    
T  20798912 atacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctaccc 20798813  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 174  Q
    |||| |   |||||||||||||||||||||| |  ||||| ||||||||||| ||||    
T  20798812 aagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc 20798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 8136625 - 8136663
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatg 308  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  8136625 gtggtcggggtttgaaccttggaccttgcatatattatg 8136663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19538911 - 19538751
Alignment:
Q  19 tacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctca 118  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||   |||||||||||||||||| ||||||||||   |||||||| | |  |    
T  19538911 tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta 19538812  T
Q  119 agtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 179  Q
    ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19538811 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 19538751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 19545563 - 19545404
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||    |||||||||||||||||| ||||||||||    ||||||| | | |    
T  19545563 atacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctaccc 19545464  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 177  Q
    |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545463 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 47228521 - 47228675
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||   |||||||||||||||||||||||||||||  |  ||||||| |   |    
T  47228521 atacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctatcc 47228620  T
Q  118 aagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc 172  Q
    |||| |   ||||||||| |||||||||||||| ||||| |||||||||||||||    
T  47228621 aagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 47465829 - 47465706
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcctacctaaggtgttctc 117  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||   |||| |||||||||||||| |||||||||| |  ||||||| | |||    
T  47465829 atacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctactc 47465730  T
Q  118 aagtagaacagcctacatcataat 141  Q
    |||| |   |||||||||||||||    
T  47465729 aagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 19555081 - 19555017
Alignment:
Q  32 ggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    ||||||||||||||||||| |||||||||| |||||    || ||||||||||||||||||||||    
T  19555081 ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggaggg 19555017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 19549883 - 19549805
Alignment:
Q  18 atacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    |||| |||||||| ||||||||||| ||||||| |||| ||||| |||||    ||||| |||||||||||||||||||    
T  19549883 atacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggaggg 19549805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
Q  39 atggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggg 96  Q
    |||| |||||||||||| ||||| |||||    |||||||||||||||||||||||||    
T  19552029 atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg 19551972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 21554927 - 21554963
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatatta 306  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  21554927 gtggtcggggtttgaatcctggaccttgcatatatta 21554963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 7959663 - 7959615
Alignment:
Q  127 agcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 175  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7959663 agcctacatcataatttgttgctgtgggggtctgcgttcgcgcggcccc 7959615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 43924105 - 43924058
Alignment:
Q  20 acttacctggatggggtcaatggatgatcaagaaggtccatggcctagg 68  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  43924105 acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctagg 43924058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 4138059 - 4138022
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattat 307  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  4138059 gtggtcggggtttgaatctcggaccttgcatatattat 4138022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 37830775 - 37830739
Alignment:
Q  276 ggggtttgaatcttggaccttgcatatattatgtatt 312  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  37830775 ggggtttgaatcttggatcttgtatatattatgtatt 37830739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 3808111 - 3808149
Alignment:
Q  270 gtggttggggtttgaatcttggaccttgcatatattatg 308  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  3808111 gtggctggggtttgaatctcggaccttgcatatattatg 3808149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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