View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8149_low_13 (Length: 294)
Name: NF8149_low_13
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 282413 - 282139
Alignment:
| Q |
16 |
aaactatcaagaacttctaagtgagaacataccatcaggagaaaaagatggtgttgaagtgagagtgatagcaggagaatcaatgggagtgaattcacct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
282413 |
aaactatcaagaacttctaagtgagaacataccatcaggagaaaaagatggtgttgaagtgagagtgatagcaggagaatcaatgggagtgaattcacct |
282314 |
T |
|
| Q |
116 |
gtttacacaagaacaccaaccatgttccttgatttcaccatgatgccaggaactcaagttcatcaaactattcctgagttatggaattcatttgcataca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
282313 |
gtttacacaagaacaccaaccatgttccttgatttcaccatgatgccaggaactcaagttcatcaaactattcctgagttatggaattcatttgcataca |
282214 |
T |
|
| Q |
216 |
taattgaaggagaaggtgtttttggtttacaaaattcatcaccaattgtggctcaccatatcattcttctcactc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
282213 |
taattgaaggagaaggtgtttttggtttacaaaattcatcaccaattgtggctcaccatatcattgttttcactc |
282139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University