View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8149_low_14 (Length: 291)

Name: NF8149_low_14
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8149_low_14
NF8149_low_14
[»] chr1 (3 HSPs)
chr1 (18-264)||(47809574-47809821)
chr1 (153-257)||(47350495-47350599)
chr1 (205-249)||(10122937-10122981)
[»] chr5 (2 HSPs)
chr5 (109-193)||(11476519-11476603)
chr5 (205-257)||(5476207-5476259)
[»] chr8 (1 HSPs)
chr8 (205-257)||(29775404-29775456)
[»] chr2 (2 HSPs)
chr2 (205-245)||(15185968-15186008)
chr2 (205-257)||(16576780-16576832)
[»] chr7 (2 HSPs)
chr7 (205-257)||(30973185-30973237)
chr7 (205-245)||(37575489-37575529)
[»] chr4 (1 HSPs)
chr4 (150-194)||(39721569-39721613)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 47809574 - 47809821
Alignment:
Q  18 attttttcctataaatagtcacaccccnnnnnnnn-accataaaattttaagaatgaaggatgtctagtagaacaagtgaagaatgatcattttttccag 116  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47809574 attttttcctataaatagtcacacccctttttttttaccataaaattttaagaatgaaggatgtctagtagaacaagtgaagaatgatcaatttttccag 47809673  T
Q  117 agcaataagacgaataaaatattttaggaggtcggtgactcattttgttccaattagccattgttatggttacaaatggacatttgttaataaaactact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47809674 agcaataagacgaataaaatattttaggaggtcggtgactcattttgttccaattagccattgttatggttacaaatggacatttgttaataaaactact 47809773  T
Q  217 aaaactattaatttggatgaaatagtacataatctttaattccacaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47809774 aaaactattaatttggatgaaatagtacataatctttaattccacaaa 47809821  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 47350599 - 47350495
Alignment:
Q  153 gactcattttgttccaattagccattgttatggttacaaatggacatttgttaataaaactactaaaactattaatttggatgaaatagtacataatctt 252  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||| || |   |||||||||||||||||||||||| ||||| ||||||| |||||||| ||    
T  47350599 gacttattttgttccaattagcaattattagggttacaaatgaacttagattaataaaactactaaaactattattttgggtgaaatattacataatatt 47350500  T
Q  253 taatt 257  Q
    |||||    
T  47350499 taatt 47350495  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10122981 - 10122937
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtacataat 249  Q
    |||||| ||||||| ||||||| ||||||||||||| ||||||||    
T  10122981 aataaatctactaagactattattttggatgaaataatacataat 10122937  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 11476603 - 11476519
Alignment:
Q  109 ttttccagagcaataagacgaataaaatattttaggaggtcggtgactcattttgttccaattagccattgttatggttacaaat 193  Q
    |||| ||||||||||||| || |||||| ||  ||||||| || |||||||||||||| ||||||| ||||||| ||||||||||    
T  11476603 ttttgcagagcaataagaagattaaaatgttaaaggaggttggcgactcattttgttctaattagcaattgttagggttacaaat 11476519  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 5476259 - 5476207
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtacataatctttaatt 257  Q
    |||||||||||||||||||||| ||||  ||||||| |||||| | |||||||    
T  5476259 aataaaactactaaaactattattttgagtgaaatattacatagtttttaatt 5476207  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29775456 - 29775404
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtacataatctttaatt 257  Q
    ||||||| |||| ||||||| | ||||| ||||||||||||||||||||||||    
T  29775456 aataaaattactgaaactataattttgggtgaaatagtacataatctttaatt 29775404  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 15185968 - 15186008
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtaca 245  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  15185968 aataaaactactaaaactattattttggatgatatagtaca 15186008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 16576780 - 16576832
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtacataatctttaatt 257  Q
    ||||||||||||||||||| || ||||  |||||||||||||| |||||||||    
T  16576780 aataaaactactaaaactaatactttgtgtgaaatagtacatagtctttaatt 16576832  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 30973185 - 30973237
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtacataatctttaatt 257  Q
    ||||| |||||||||||||||| ||||  ||||||||||||| || |||||||    
T  30973185 aataatactactaaaactattactttgagtgaaatagtacatgatgtttaatt 30973237  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 37575529 - 37575489
Alignment:
Q  205 aataaaactactaaaactattaatttggatgaaatagtaca 245  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  37575529 aataaaactactaaaactattattttaggtgaaatagtaca 37575489  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 39721613 - 39721569
Alignment:
Q  150 ggtgactcattttgttccaattagccattgttatggttacaaatg 194  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||    
T  39721613 ggtgactcattttattccaattaacaattgttagggttacaaatg 39721569  T

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