View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_15 (Length: 291)
Name: NF8149_low_15
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_15 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 42734362 - 42734551
Alignment:
| Q |
1 |
cgaccaccgcgaccggtcttcttcgcgtcgactctgactcttcggccacaacaaggtctaggactcaccgttattcttcttccggtaccttccatattct |
100 |
Q |
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| T |
42734362 |
cgaccaccgcgaccggtcttcttcgcgtcgactctgactcttcggccacaacaaggtctaggactcaccgtgattcttcttccggtaccttccatattct |
42734461 |
T |
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| Q |
101 |
tcaccacctcacagtaacaataattctcccatctgaaaaacgagaattagggttttgtacgaaaaggtactgttactgtgtgagtttcat |
190 |
Q |
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| T |
42734462 |
tcaccacctcacagtaacaataattctcccatctgaaaaacgagaattagggttttgtacgaaaaggtactgttactgtgtgagtttcat |
42734551 |
T |
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Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 20972632 - 20972805
Alignment:
| Q |
17 |
tcttcttcgcgtcgactctgactcttcggccacaacaaggtctaggactcaccgttattcttcttccggtaccttccatattcttcaccacctcacagta |
116 |
Q |
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| T |
20972632 |
tcttcttcgcatcgactctgactcttcggctgcaacaaggtctaggactcaccgtgattcttcttccggtaccttccttattcttcaccacttcacagta |
20972731 |
T |
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| Q |
117 |
acaataattctcccatctgaaaaacgagaattagggttttgtacgaaaaggtactgttactgtgtgagtttcat |
190 |
Q |
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| T |
20972732 |
acaataattcccccacctgaaaaacgagaattagggtttcgtacgaaaaagtattgttactgtgtaagtttcat |
20972805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 8431 - 8586
Alignment:
| Q |
35 |
tgactcttcggccacaacaaggtctaggactcaccgttattcttcttccggtaccttccatattcttcaccacctcacagtaacaataattctcccatct |
134 |
Q |
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| T |
8431 |
tgactcttcggccgcaacaaagtctaggactcaccgtgattcttcttctggtaccttccttattcttcaccacctcacagtagcaataattatcccacct |
8530 |
T |
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| Q |
135 |
gaaaaacgagaattagggttttgtacgaaaaggtactgttactgtgtgagtttcat |
190 |
Q |
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| T |
8531 |
gaaaaacaagaattagggtttcttacgaaaaagtactgttactgtgtgagtttcat |
8586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 41406894 - 41406975
Alignment:
| Q |
35 |
tgactcttcggccacaacaaggtctaggactcaccgttattcttcttccggtaccttccatattcttcaccacctcacagta |
116 |
Q |
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| T |
41406894 |
tgactcttcggccgcaacaaagtttaggactcaccgggattcttcttctggtaccttccttattcttcaccacctcacagta |
41406975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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