View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_18 (Length: 229)
Name: NF8149_low_18
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22161424 - 22161200
Alignment:
| Q |
1 |
tcatcatcactggtaatgataaggctggcatccaacagttgaaacaacatctatcctttcactttcaaactaaagatttgggtccactgaaatatttctt |
100 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22161424 |
tcatcatctttggtaatgataaggctgacatccaacagttgaaacaacatctatcccttcagtttcaaactaaagatttgggtccactgaaatatttctt |
22161325 |
T |
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| Q |
101 |
ggggattgaagttgctcaatccaagactggagtggctattactcagcgaagatatgctttcgatattcttgaggaaactagtttgcttgattgccgacct |
200 |
Q |
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|||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
22161324 |
ggggattgaagttgttcagtctaagactggagtggctattactcagcgaagatatgcttttgatattcttgaggaaactggtttgcttgattgccgacct |
22161225 |
T |
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| Q |
201 |
agtgacacttctatggatcccaacg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
22161224 |
agtgacacttctatggatcccaacg |
22161200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 818009 - 817785
Alignment:
| Q |
1 |
tcatcatcactggtaatgataaggctggcatccaacagttgaaacaacatctatcctttcactttcaaactaaagatttgggtccactgaaatatttctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
818009 |
tcatcatcactggtaatgataaggctggcatccaacaattgaaacaacatctatcccttcactttcaaactaaagatttgggtccactgaactatttctt |
817910 |
T |
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| Q |
101 |
ggggattgaagttgctcaatccaagactggagtggctattactcagcgaagatatgctttcgatattcttgaggaaactagtttgcttgattgccgacct |
200 |
Q |
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| T |
817909 |
ggggattgaagttgctcagtccaagactggagtggctattactcaacgaagatatgctcttgatattcttgaggaaactggtttgcttgcttgccgacct |
817810 |
T |
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| Q |
201 |
agtgacacttctatggatcccaacg |
225 |
Q |
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| T |
817809 |
agtgacactcctatggatcccaacg |
817785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 20592982 - 20592785
Alignment:
| Q |
28 |
gcatccaacagttgaaacaacatctatcctttcactttcaaactaaagatttgggtccactgaaatatttcttggggattgaagttgctcaatccaagac |
127 |
Q |
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| T |
20592982 |
gcatccaacagttgaaacaacatctatcccttcactttcaaactaaagatttgggtccactgaaatatttcttagggattgaagttgctcagtccaagac |
20592883 |
T |
|
| Q |
128 |
tggagtggctattactcagcgaagatatgctttcgatattcttgaggaaactagtttgcttgattgccgacctagtgacacttctatggatcccaacg |
225 |
Q |
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| T |
20592882 |
tggagtggctattactcagcgaagatatgctcttgatattcttgaggaaactagtttgcttgattgccgacctagtgacacttctatggatcccaacg |
20592785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 24182146 - 24181924
Alignment:
| Q |
2 |
catcatcactggtaatgataaggctggcatccaacagttgaaacaacatctatcctttcactttcaaactaaagatttgggtccactgaaatatttcttg |
101 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||| || ||||| |||||||||||| |
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| T |
24182146 |
catcatcactggtaatgataagactggcatccaacagttaaaacaacgtctatcatttcacttttaaactaaagatttaggaccactaaaatatttcttg |
24182047 |
T |
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| Q |
102 |
gggattgaagttgctcaatccaa-gactggagtggctattactcagcgaagatatgctttcgatattcttgaggaaactagtttgcttgattgccgacct |
200 |
Q |
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||||||||||||||||| ||||| || | ||||||||| ||||||||||||||||| | |||| |||||||||| | | ||||||||||| |||||| |
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| T |
24182046 |
gggattgaagttgctcagtccaaagatatgtgtggctattgctcagcgaagatatgctcttaatatacttgaggaaatttgcttgcttgattgtcgacct |
24181947 |
T |
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| Q |
201 |
agtgacacttctatggatcccaa |
223 |
Q |
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|||| |||| ||||||||||||| |
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| T |
24181946 |
agtgtcactcctatggatcccaa |
24181924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 30665813 - 30665918
Alignment:
| Q |
124 |
agactggagtggctattactcagcgaagatatgctttcgatatt----cttgaggaaactagtttgcttgattgccgacctagtgacacttctatggatc |
219 |
Q |
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||||||| ||||||||||||||||||| ||||||| | |||| ||||| |||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
30665813 |
agactggtgtggctattactcagcgaaaatatgctcttgatagatacacttgaagaaactggcttgcttgattgccgacctagtgacactcctatggatc |
30665912 |
T |
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| Q |
220 |
ccaacg |
225 |
Q |
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|||||| |
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| T |
30665913 |
ccaacg |
30665918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 34611081 - 34611142
Alignment:
| Q |
162 |
gatattcttgaggaaactagtttgcttgattgccgacctagtgacacttctatggatcccaa |
223 |
Q |
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||||| |||||||||||| | ||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
34611081 |
gatatacttgaggaaactggcttgcttgattgttgacccagtgacactcctatggatcccaa |
34611142 |
T |
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