View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_2 (Length: 655)
Name: NF8149_low_2
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 28615767 - 28615125
Alignment:
| Q |
1 |
attaattagaatacctaacttaaagatgaactgatcaatcaatcccattgaaattgaggtagagcccnnnnnnnttgcgtctgctcgaaggaaagtggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
28615767 |
attaattagaatacctaacttaaagatgaactgatcaatcaatcccattgaaattgaggtagagcccaagaaaattgtgtctgctcgaaggaaagtggta |
28615668 |
T |
|
| Q |
101 |
aagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaacactctcacagagaaaataaactgaatcnnnnnnnaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28615667 |
aagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaacactctcacagagaaaataaactgaatctttttttaa |
28615568 |
T |
|
| Q |
201 |
cttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
28615567 |
cttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactcttaagcatgttcatttgtacaagt |
28615468 |
T |
|
| Q |
301 |
tttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtcgattagatatcttttcaccatccatatgtctccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28615467 |
tttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtcgattagatatcttttcaccatccatatgtctccat |
28615368 |
T |
|
| Q |
401 |
tcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacaatattcagtgctagttatcttctcatagtaagtaaaattagggtcatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28615367 |
tcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacgatattcagtgctagttatcttctcatagtaagtaaaattagggtcatt |
28615268 |
T |
|
| Q |
501 |
tgagcgatcaggg---ggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcagcaactaacatgcctttataaaatacaacatcattg |
597 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28615267 |
tgagcgatcagggggaggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcagcaactaacatgcctttataaaatacaacatcattg |
28615168 |
T |
|
| Q |
598 |
aaatgtaataaatttgtaactataggaatccaaaatggttggt |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28615167 |
aaatgtaataaatttgtaactataggaatccaaaatggttggt |
28615125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28617924 - 28617773
Alignment:
| Q |
1 |
attaattagaatacctaacttaaagatgaactgatcaatcaatcccattgaaattgaggtagagcccnnnnnnnttgcgtctgctcgaaggaaagtggta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| || ||| ||||||||| |||| |
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|
| T |
28617924 |
attaattaaaatacctaacttaaagatgaactgatcaatcaatcccattgaaattgtggtagaagccaaaaaaattgcatccgcttgaaggaaagcggta |
28617825 |
T |
|
| Q |
101 |
aagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaa |
153 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28617824 |
aaga-tgtatccgacagcttccatccttcacattatagatcccgaaccctaaa |
28617773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 28611951 - 28612280
Alignment:
| Q |
10 |
aatacctaacttaaagatgaactgatcaatcaatcccattgaaattgaggtagagcccnnnnnnnttgcgtctgctcgaaggaaagtggtaaagattgta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| || ||| ||| |||| || || |||||||| ||||||||||| |
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|
| T |
28611951 |
aatacctaacttaaagatgaactgatcaatcagtcccactgaaattgtggcagaacccaaaaaggttgcatccacttgaaggaaatcggtaaagattgcc |
28612050 |
T |
|
| Q |
110 |
tctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaacactctcacagagaaaataaactgaatcnnnnnnnaacttggagaa |
209 |
Q |
| |
|
| ||| ||||||||||||||| |||||||| ||| || ||||||| || | || ||| | | |||||||| ||||| ||||||||| |
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|
| T |
28612051 |
tttgacagcttccatccttcatattatagacccctaatgctaaatcatccatatcatagtcataaataaaataaatcgaatctttttctaacttggagtg |
28612150 |
T |
|
| Q |
210 |
acaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaagttttccactc |
309 |
Q |
| |
|
||||||||| | |||||||| ||||| |||| || || || |||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||| |
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|
| T |
28612151 |
acaagaggctggcacagaaattgaatcacca--at-tccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactc |
28612247 |
T |
|
| Q |
310 |
ttggtgtccagtttcaatttgtaaacgtcgagt |
342 |
Q |
| |
|
| | ||||||| ||||||||| ||||||||| |
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|
| T |
28612248 |
tggacatccagttccaatttgtacacgtcgagt |
28612280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 337
Target Start/End: Complemental strand, 29288546 - 29288408
Alignment:
| Q |
199 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
298 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||| |||| | || || |||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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|
| T |
29288546 |
aacttggagaaagcagaggccggcacagaaatggaatcaccaacacttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaa |
29288447 |
T |
|
| Q |
299 |
gttttccactcttggtgtccagtttcaatttgtaaacgt |
337 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |||||| |
|
|
| T |
29288446 |
gttttccactctgggcatccagttccaatttgaaaacgt |
29288408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 28621958 - 28621909
Alignment:
| Q |
366 |
gattagatatcttttcaccatccatatgtctccattcaatgatttcacaa |
415 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
28621958 |
gattagatatcttctaaccatccatatgtctccattcaatgatttcacaa |
28621909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 594
Target Start/End: Complemental strand, 28621861 - 28621730
Alignment:
| Q |
463 |
ctagttatcttctcatagtaagtaaaattagggtcatttgagcgatcagggggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcag |
562 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||| ||||| |||| | | |||| |
|
|
| T |
28621861 |
ctagctatcttctcatagtaagtaaaattagggtcatatgagtcatcacaaggaggattgttgaacttgaaggatataatggcgtctccttcactgtcag |
28621762 |
T |
|
| Q |
563 |
caactaacatgcctttataaaatacaacatca |
594 |
Q |
| |
|
||| || || |||||| ||||||||||||||| |
|
|
| T |
28621761 |
caaataccaagcctttgtaaaatacaacatca |
28621730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 29270558 - 29270506
Alignment:
| Q |
363 |
gtcgattagatatcttttcaccatccatatgtctccattcaatgatttcacaa |
415 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
29270558 |
gtcgattaaacatcttttcaccatccatgtgtctccagtcaatgatttcacaa |
29270506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 29283107 - 29282976
Alignment:
| Q |
199 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
298 |
Q |
| |
|
|||||||||||| |||||| | |||||| | ||||| |||| | || || |||||||||| ||||| ||||||||||||| ||||||| ||| | | |
|
|
| T |
29283107 |
aacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttcta |
29283008 |
T |
|
| Q |
299 |
gttttccactcttggtgtccagtttcaatttg |
330 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |
|
|
| T |
29283007 |
gttttccactctgggcatccagttccaatttg |
29282976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 28623377 - 28623327
Alignment:
| Q |
256 |
aaaatgttgtctcccaaactctcaagcctgttcatttgtacaagttttcca |
306 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
28623377 |
aaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcca |
28623327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 600
Target Start/End: Original strand, 28612497 - 28612538
Alignment:
| Q |
559 |
tcagcaactaacatgcctttataaaatacaacatcattgaaa |
600 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
28612497 |
tcagcaattagcaggcctttataaaatacaacatcattgaaa |
28612538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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