View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_3 (Length: 525)
Name: NF8149_low_3
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 22379850 - 22380329
Alignment:
| Q |
18 |
ataaacagtcacctggtttgacaggaataggcttcgatggagtaacggagaatgtgttgataatggtgactggaatattcaaaggattgagagggagttc |
117 |
Q |
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| T |
22379850 |
ataaacagtcacctggtttgacaggaataggcttcgatggagtaacggagaatgtgttgataatggtgactggaatattcaaaggattgagagggagttc |
22379949 |
T |
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| Q |
118 |
ttgaacccatggaggagccatgataaaatgtggtgagagtggttatgtctgatggttgcatttgtagagacagaatttgtttaatcacgcaaagatggga |
217 |
Q |
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| T |
22379950 |
ttgaacccatggaggagccatgataaaatgtggtgagagtggttatgtctgatggttgcatttgtagagacagaatttgtttaatcacgcaaagatggga |
22380049 |
T |
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| Q |
218 |
aaaagaaaagatagaagatgcaaagaggattgagataaataagatcaggtagtgtcataaagatttctaggtttgatgttggtgactgataaatagtatg |
317 |
Q |
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| T |
22380050 |
aaaagaaaagatagaagatgcaaagaggattgagataaataagatcaggtagtgtcataaagatttctaggtttgatgttggtgactgataaatagtatg |
22380149 |
T |
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| Q |
318 |
atcctttattatatgataaagtgattgctgcatgaattcaattatgttttcttcaagaattataagtgaatatttcctaatacatgtaagaaaatattat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22380150 |
atcctttattatatgataaagtgattgctgcatgaattcaattatgttttcttcaagaattataagtgaatatttcctaatacatgtaagaaaatattat |
22380249 |
T |
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| Q |
418 |
aaaagcatggtgatgatcatgcataattctgttatagtgcgtaaaactttatccagaattaaaattgagaactatattac |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22380250 |
aaaagcatggtgatgatcatgcataattctgttatagtgcgtaaaactttatccagaattaaaattgagaactatattac |
22380329 |
T |
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