View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_5 (Length: 471)
Name: NF8149_low_5
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 5771464 - 5771901
Alignment:
| Q |
17 |
aatttctcatatttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctgagcttgtgaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771464 |
aatttctcatatttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctgagcttgtgaaat |
5771563 |
T |
|
| Q |
117 |
cattttctgtactaacccttttcttaatccaaacagctttgctactcaaataataactgaacattttgaagctctaggtaggttctgaaattagtgtaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771564 |
cattttctgtactaacccttttcttaatccaaacagctt-gctactcaaata---actgaacattttgaagctctaggtaggttctgaaattagtgtaag |
5771659 |
T |
|
| Q |
217 |
tgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattttatgcctcgctcaaaacataggttatgtttgtttttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771660 |
tgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattttatgcctcgctcaaaacataggttatgtttgtttttgt |
5771759 |
T |
|
| Q |
317 |
tttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctcnnnnnnnctatagcttgttggaaggtttgacatgttacgacaatc |
416 |
Q |
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| T |
5771760 |
tttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctctttttttctatagcttgttggaaggtttgacatgttacgacaatc |
5771859 |
T |
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| Q |
417 |
taagacnnnnnnngctacctcatattattgtaagtgatgtcca |
459 |
Q |
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| T |
5771860 |
taagac-aacaaagctacctcatattattgtaagtgatgtcca |
5771901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 5765534 - 5765617
Alignment:
| Q |
17 |
aatttctcatatttaatcatagattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctga |
105 |
Q |
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| T |
5765534 |
aatttctcatatttaatcataggttagaaactgagaat-----aagagaatatagaaatgaaatcatttaaggatcttggcttatctga |
5765617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 20525401 - 20525341
Alignment:
| Q |
40 |
ttagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
100 |
Q |
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| T |
20525401 |
ttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggctta |
20525341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 30642685 - 30642745
Alignment:
| Q |
40 |
ttagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
100 |
Q |
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| T |
30642685 |
ttagaaactgagaatggaggaagagaacaaagaaatgaaatcatttaaggatctcggctta |
30642745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 12119833 - 12119770
Alignment:
| Q |
37 |
agattagaaactgagaatggaggaagagaatatagaaaggaaatcatttaaggatattggctta |
100 |
Q |
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| T |
12119833 |
agattagaaagtgataatggaggaagagaataaagaaatcaaatcatttaaagatcttggctta |
12119770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 11923000 - 11923081
Alignment:
| Q |
28 |
tttaatcatagattagaaactgagaat--ggaggaagagaatatagaaaggaaatcatttaaggatattggcttatctgagc |
107 |
Q |
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|||| |||||| |||| |||||||||| ||| |||||||||| ||||| |||||||||||||||| | || |||||||||| |
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| T |
11923000 |
tttattcataggttagtaactgagaatatggaagaagagaataaagaaatgaaatcatttaaggatctgggtttatctgagc |
11923081 |
T |
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