View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_7 (Length: 431)
Name: NF8149_low_7
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 46549409 - 46549006
Alignment:
| Q |
18 |
taaactacatacaattcaataaagagtaatcaaactatgtatattctaacagtaacaatgtatataatataaaaatcctatatagggtagattcatatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549409 |
taaactacatacaattcaataaagagtaatcaaactatgtatattctaacagtaacaatgtatataatataaaaatcctatatagggtagattcatatca |
46549310 |
T |
|
| Q |
118 |
tccaatgaagcatttatcaaagaacagcatagaagtatttacacacttgattgaataccaacaactattagaaacaagaatactcaatctcaaggattac |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549309 |
tccaatgaagcatttatcaaagaacagcatagaagtatttacacacttgattgaataccaacaactattagaaacaagaatactcaatctcaaggattac |
46549210 |
T |
|
| Q |
218 |
attctagataaaccattaatctaatcacatcaaaccttttcacactccacaagcacaaatgtaattgtttctactaaatcaagcagaatattcttaattg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46549209 |
attctagataaaccattaatctaatcacatcaaaccttttcacactccacaagcacaaatgtaattgtttctaataaatcaagcagaatattcttaattg |
46549110 |
T |
|
| Q |
318 |
acaacataatccataagcataccctgaagggtgctgatcgtctcccaagcctctttctaaaatagttgttcctccaaggtcctttaatcttttgtccagc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549109 |
acaacataatccataagcataccctgaagggtgctgatcatctcccaagcctctttctaaaatagttgttcctccaaggtcctttaatcttttgtccagc |
46549010 |
T |
|
| Q |
418 |
ttct |
421 |
Q |
| |
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|||| |
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| T |
46549009 |
ttct |
46549006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 1025967 - 1025564
Alignment:
| Q |
18 |
taaactacatacaattcaataaagagtaatcaaactatgtatattctaacagtaacaatgtatataatataaaaatcctatatagggtagattcatatca |
117 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1025967 |
taaactacatataattcaatacagagtaatcaaactatgtatattcaaacagtaacaatgtatataatataaaaatcctatatagggtatattcatatca |
1025868 |
T |
|
| Q |
118 |
tccaatgaagcatttatcaaagaacagcatagaagtatttacacacttgattgaataccaacaactattagaaacaagaatactcaatctcaaggattac |
217 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| ||||||| || |||| ||| ||||||||||||||||| ||| |||||||||||||||||| |
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| T |
1025867 |
tccaaggaagcatttatcaaagaacgacatagaagtattcacacactagagtgaacaccgacaactattagaaacaaaaatgctcaatctcaaggattac |
1025768 |
T |
|
| Q |
218 |
attctagataaaccattaatctaatcacatcaaaccttttcacactccacaagcacaaatgtaattgtttctactaaatcaagcagaatattcttaattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1025767 |
attctagataaaccattaatctaatcacatcaaaccttttcacactccacaagcacaaatgtgattgtttctactaaatcaagcagaatattcttaattg |
1025668 |
T |
|
| Q |
318 |
acaacataatccataagcataccctgaagggtgctgatcgtctcccaagcctctttctaaaatagttgttcctccaaggtcctttaatcttttgtccagc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025667 |
acaacataatccataagcataccctgaagggtgctgatcatctcccaagcctctttctaaaatagttgttcctccaaggtcctttaatcttttgtccagc |
1025568 |
T |
|
| Q |
418 |
ttct |
421 |
Q |
| |
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|||| |
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|
| T |
1025567 |
ttct |
1025564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 40827434 - 40827353
Alignment:
| Q |
340 |
cctgaagggtgctgatcgtctcccaagcctctttctaaaatagttgttcctccaaggtcctttaatcttttgtccagcttct |
421 |
Q |
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|||||||| |||||||| |||||||| |||||||||| ||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
40827434 |
cctgaaggttgctgatcatctcccaaacctctttctagaatagcttttcctccaaggtccattaatcttttgtccagcttct |
40827353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 40827575 - 40827446
Alignment:
| Q |
179 |
caactattagaaacaagaatactcaatctcaaggattacattctagataaaccattaatctaatcacatcaaaccttttcacactccacaagcacaaatg |
278 |
Q |
| |
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|||||||||||||||||||||| || | |||||| |||| ||| |||||| || ||| | ||||||| ||||||||||| | |||||||||||||| | |
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| T |
40827575 |
caactattagaaacaagaatacaaaaacacaaggactacactctcgataaatcaataaattgatcacattaaaccttttcatattccacaagcacaaagg |
40827476 |
T |
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| Q |
279 |
-taattgtttctactaaatcaagcagaata |
307 |
Q |
| |
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|| ||||||||| ||||||||||||||| |
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| T |
40827475 |
ttacatgtttctacaaaatcaagcagaata |
40827446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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