View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8149_low_9 (Length: 370)
Name: NF8149_low_9
Description: NF8149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8149_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 30337236 - 30337594
Alignment:
| Q |
2 |
ttgtttgccgttactcctactttcatcttcttcagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgatgccgatgaaaaaca |
101 |
Q |
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| T |
30337236 |
ttgtttgccgttactcctactttcatcttcttaagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgattccgatgaaaaaca |
30337335 |
T |
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| Q |
102 |
aaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaac |
201 |
Q |
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| T |
30337336 |
aaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaac |
30337435 |
T |
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| Q |
202 |
aaccgagaaaaccctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggcgtcgttct |
301 |
Q |
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| T |
30337436 |
aaccgtgaaaatcctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggggtcgttct |
30337535 |
T |
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| Q |
302 |
catttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctg |
360 |
Q |
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| T |
30337536 |
catttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctg |
30337594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 30325748 - 30325886
Alignment:
| Q |
151 |
ttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactc |
250 |
Q |
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| T |
30325748 |
ttcacccctttcaactacctccgattactcaccttccgtgaatgcttcaacaacccagaaaaccccattaacctctctctttcccctttccctccatctc |
30325847 |
T |
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| Q |
251 |
tccaacaactcgttttcatagataacctttctcccattc |
289 |
Q |
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| T |
30325848 |
tagaacatcttattttctttgacaacccttctcccattc |
30325886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30325598 - 30325642
Alignment:
| Q |
1 |
attgtttgccgttactcctactttcatcttcttcagtatcgcaaa |
45 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30325598 |
attgtttgccgttactcctactttcattttcttcagtatcgcaaa |
30325642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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