View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8150_low_3 (Length: 261)
Name: NF8150_low_3
Description: NF8150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8150_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 28841303 - 28841527
Alignment:
| Q |
17 |
acatacaaggctaaattggaggaaggaataacagttgtggttaaaaggttgagagaagttgtcgttggaaagaaggagtttgagcaacagatggaggttg |
116 |
Q |
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| T |
28841303 |
acatacaaggctaaattggaggaaggaatgacagttgtggttaaaaggttaagagaagttttggtcggaaagaaggagtttgagcagcagatggaggttg |
28841402 |
T |
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| Q |
117 |
ttggaagaattggaagacatcctaatgtcataacacttagagcttattactattccaaagatgagaaacttcttgtttatgactacttgctaggtggaag |
216 |
Q |
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| T |
28841403 |
ttggaagaattggaagacatcctaatgtcctaccacttagagcttattactattccaaagatgagaaacttcttgtttgcgactacatgcttggtggaag |
28841502 |
T |
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| Q |
217 |
cttgttttcattacttcatggtatg |
241 |
Q |
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| T |
28841503 |
cttgttttcattacttcatggtatg |
28841527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 2386017 - 2385977
Alignment:
| Q |
161 |
tattactattccaaagatgagaaacttcttgtttatgacta |
201 |
Q |
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| T |
2386017 |
tattactattccaaagatgagaaactggttgtgtatgacta |
2385977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 42816815 - 42816984
Alignment:
| Q |
18 |
catacaaggctaaattggaggaaggaataacagttgtggttaaaaggttgagagaagttgtcgttggaaagaaggagtttgagcaacagatggaggttgt |
117 |
Q |
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| T |
42816815 |
catacaaggctgttttggaggagggagtgacaatggtagttaaaaggttgaaggaagttatggtaggaaagaaggagtttgaacaacagttggatattgt |
42816914 |
T |
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| Q |
118 |
tggaagaattggaagacatcctaatgtcataacacttagagcttattactattccaaagatgagaaactt |
187 |
Q |
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| T |
42816915 |
tgggagaatcggacgccatccaaatgttatgccacttcgagcttattactactccaaagatgagaaactt |
42816984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 28223112 - 28223023
Alignment:
| Q |
23 |
aaggctaaattggaggaaggaataacagttgtggttaaaaggttgagagaagttgtcgttggaaagaaggagtttgagcaacagatggag |
112 |
Q |
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| T |
28223112 |
aaggctatattggaggaggccatgacagttgtggtgaaaaggttgaaagaagttgtggttggaaaaaaggagtttgatcagcagatggag |
28223023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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