View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8150_low_4 (Length: 258)

Name: NF8150_low_4
Description: NF8150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8150_low_4
NF8150_low_4
[»] chr8 (11 HSPs)
chr8 (1-198)||(43539752-43539949)
chr8 (18-198)||(43539096-43539276)
chr8 (23-198)||(59548-59723)
chr8 (25-198)||(35675612-35675785)
chr8 (47-196)||(60168-60313)
chr8 (20-152)||(35178802-35178934)
chr8 (218-258)||(43539693-43539733)
chr8 (80-172)||(28524811-28524903)
chr8 (24-172)||(32898423-32898571)
chr8 (165-198)||(35676373-35676406)
chr8 (21-117)||(2552008-2552104)
[»] chr4 (9 HSPs)
chr4 (24-198)||(29980200-29980373)
chr4 (25-198)||(39267720-39267892)
chr4 (26-198)||(29978833-29979007)
chr4 (25-198)||(39268803-39268975)
chr4 (83-172)||(21623095-21623184)
chr4 (74-172)||(21621870-21621968)
chr4 (95-138)||(32244700-32244743)
chr4 (80-136)||(2786274-2786330)
chr4 (108-172)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (23-151)||(26652603-26652731)
chr3 (15-198)||(27823717-27823900)
chr3 (80-175)||(40206912-40207008)
chr3 (19-152)||(17700510-17700643)
chr3 (125-198)||(30270735-30270808)
chr3 (95-168)||(40205950-40206023)
chr3 (24-89)||(47118112-47118177)
chr3 (20-161)||(48572978-48573119)
chr3 (24-152)||(17701917-17702045)
chr3 (25-68)||(20464543-20464586)
chr3 (24-170)||(52318297-52318443)
chr3 (95-131)||(40317838-40317874)
[»] chr7 (13 HSPs)
chr7 (25-198)||(8484158-8484331)
chr7 (15-198)||(8077545-8077731)
chr7 (23-143)||(8075482-8075601)
chr7 (25-172)||(48646047-48646194)
chr7 (21-172)||(35727693-35727843)
chr7 (24-171)||(7258272-7258419)
chr7 (29-68)||(48788754-48788793)
chr7 (29-172)||(44333141-44333282)
chr7 (108-175)||(384934-385001)
chr7 (22-68)||(385693-385739)
chr7 (23-69)||(21062813-21062859)
chr7 (24-68)||(10899155-10899199)
chr7 (81-137)||(24844627-24844683)
[»] chr2 (9 HSPs)
chr2 (24-152)||(32766237-32766365)
chr2 (29-172)||(31091505-31091648)
chr2 (24-137)||(8420010-8420123)
chr2 (22-138)||(12746213-12746329)
chr2 (80-172)||(15441949-15442041)
chr2 (80-168)||(38853808-38853896)
chr2 (27-59)||(5428361-5428393)
chr2 (20-68)||(14705129-14705177)
chr2 (24-172)||(32764935-32765082)
[»] chr5 (11 HSPs)
chr5 (20-137)||(9538062-9538179)
chr5 (20-68)||(24900414-24900462)
chr5 (29-172)||(4592863-4593006)
chr5 (29-136)||(8074453-8074560)
chr5 (29-172)||(19182952-19183095)
chr5 (101-168)||(19271416-19271483)
chr5 (23-65)||(16978988-16979030)
chr5 (29-99)||(28591165-28591235)
chr5 (23-68)||(14891225-14891270)
chr5 (26-119)||(23772809-23772902)
chr5 (80-168)||(26327054-26327142)
[»] chr1 (5 HSPs)
chr1 (83-168)||(50107185-50107270)
chr1 (24-138)||(11060796-11060910)
chr1 (23-172)||(7945532-7945681)
chr1 (80-137)||(1001207-1001264)
chr1 (120-172)||(534517-534569)
[»] chr6 (1 HSPs)
chr6 (25-137)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 43539949 - 43539752
Alignment:
Q  1 tgttgctctttatgaataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43539949 tgttgctctttatgaataatttttgagtaaatagacactttggtccctgactttgcacctcgctgtcattttagtcccctactcaggataaactacaaaa 43539850  T
Q  101 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43539849 tagtccttgaatatgcacatctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 43539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 43539096 - 43539276
Alignment:
Q  18 aatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 117  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  43539096 aattattgagtaaatagtcactttggtccctaactttgcacctcgctgtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgta 43539195  T
Q  118 catctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
     |||||||||||||||| ||||||||||||||||| | ||||||||   ||||||||||| ||||||||||||||||||||    
T  43539196 tatctgttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 59548 - 59723
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 122  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatct 59647  T
Q  123 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    || |||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  59648 gtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 35675612 - 35675785
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| || |||||| || ||||||||    
T  35675612 gagttaatagtcattttggtcgttgactttgcacctcgctatcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgt 35675711  T
Q  125 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||| | ||||||||||||||||  | |||||| | ||||||||||||| |||| ||||||||| |||||    
T  35675712 tatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagaccaaattaaaagt 35675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 60313 - 60168
Alignment:
Q  47 ttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgtt 146  Q
    |||||||||||||||| ||||| ||| |||||    ||||||||||||||| |||||||| |||||||| | | ||||||||||| ||||| ||||| ||    
T  60313 ttgactttgcacctcgttgtcactttggtccc----tcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttaccttt 60218  T
Q  147 aaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaa 196  Q
    |||||  | ||||||||  |||||||||| ||||||||||||||||||||    
T  60217 aaaaatttctgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 35178934 - 35178802
Alignment:
Q  20 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 119  Q
    |||| ||| |||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||| || ||||||  ||||| ||| | |||||     
T  35178934 ttttcgagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcact 35178835  T
Q  120 tctgttatcagtttagtccttaccgttaaaaaa 152  Q
    || ||||||| |||||||| |  ||||||||||    
T  35178834 tccgttatcactttagtccctgacgttaaaaaa 35178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 43539733 - 43539693
Alignment:
Q  218 attaatgataaaaaaccaaataaagaatatttatcaccttc 258  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  43539733 attaatgataaaaaaccaaaaaaagaatatttatcaccttc 43539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 28524811 - 28524903
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| |||||||  |  ||||||| || | |||||||| ||||||||    
T  28524811 gactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtg 28524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 32898571 - 32898423
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||| ||||||||||||| |||| ||||| |||| ||| ||||||  |  ||||| |||| ||||| || ||||||  ||||| ||| | ||||| || |    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |||||| |||||||| |  |||||||||| | |||||| | ||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 32898423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  165 atgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 2552008 - 2552104
Alignment:
Q  21 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 117  Q
    ||||||||||||  ||| ||||||| ||||||||| || ||||||| ||   ||||   |||||||||| || |||||| || ||||||||||||||    
T  2552008 ttttgagtaaatgatcattttggtctttgactttgtacgtcgctgttatcaaagtctttgactcaggattaaatacaaagtaatccttgaatgtgca 2552104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 29980373 - 29980200
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | || ||    
T  29980373 tgagtaaatagtcactttgatcct-gactttacacctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttg 29980275  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||||||| |||||||||||||| | ||||| ||  | |||||||||| ||||| |||||  |||||||    
T  29980274 ttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtcaattataggaaccaatctgaaagt 29980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 39267720 - 39267892
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| || |||| |||| | |||||||| ||||| | ||| | |||||||| ||||||||    
T  39267720 gagtaaatagtcattttattcct-gactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgt 39267818  T
Q  125 tatcagtttagtccttaccgttaaaaaacta-tgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||| ||||||| |||||| |||||||||||||    
T  39267819 tatcagtttagtccttaccgtt-aataactaccgttaaatgatgatatgtcaataataggggccaaattgaaagt 39267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 29978833 - 29979007
Alignment:
Q  26 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagt-ccccgactcaggataaactac-aaaatagtccttgaatgtgcacatctg 123  Q
    |||||||||||| |||||| | ||||||| ||| ||| ||||| |||||| |||||||| | ||| || ||| |||||||||  ||||  |  |||| ||    
T  29978833 agtaaatagtcattttggttcctgactttacacttcgttgtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttg 29978932  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    ||||||||||| ||||||||||||||||  | |||||||||| ||||||| ||| | ||||||||||||||||||    
T  29978933 ttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 39268975 - 39268803
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    ||||||||| ||||||| || | ||| ||| || |||||||||| ||||||| ||||||| | ||||| ||||| | ||| | |||| ||| |  |||||    
T  39268975 gagtaaataatcactttagttcctgattttacatctcgctgtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgt 39268876  T
Q  125 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    ||||||||||||  ||||||||| |||||| |||||  |  ||||||||||||| || ||||||||||||||||    
T  39268875 tatcagtttagtttttaccgtta-aaaactctgttacatggtgatgtgtcaatcctaaggaccaaattgaaagt 39268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 21623184 - 21623095
Alignment:
Q  83 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||    ||||||| || |||||||||| ||||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtg 21623095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 21621870 - 21621968
Alignment:
Q  74 gtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||| |   |||||| || |||||||||| ||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtg 21621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 32244743 - 32244700
Alignment:
Q  95 acaaaatagtccttgaatgtgcacatctgttatcagtttagtcc 138  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  32244743 acaaagtagtccttgaatgtgcacatccgttatcactttagtcc 32244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 2786274 - 2786330
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt 136  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| ||||||    
T  2786274 gactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 24753603 - 24753539
Alignment:
Q  108 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||| || | |||||||| ||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgtg 24753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 26652731 - 26652603
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 122  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||| |  |||    
T  26652731 ttgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctct 26652632  T
Q  123 gttatcagtttagtccttaccgttaaaaa 151  Q
    |||||||||||||||||||| ||||||||    
T  26652631 gttatcagtttagtccttactgttaaaaa 26652603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 27823717 - 27823900
Alignment:
Q  15 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 114  Q
    |||||||| |||| ||||||||| |||  ||||||| ||| |||||  ||||||||||| || ||||  ||||||||| ||||| | |||| ||||||||    
T  27823717 aataatttatgaggaaatagtcattttaatccttgattttacacctaactgtcattttaatctccgatccaggataaaatacaataaagtctttgaatgt 27823816  T
Q  115 gcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
      |  ||||||||| ||||||| ||||||||||||||  | |||||| |  |||||||||||| ||| ||| ||||||||||||    
T  27823817 ctatctctgttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggatcaaattgaaagt 27823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 40207008 - 40206912
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt-ccttaccgttaaaaaactatgttaactcatgatgtgtca 175  Q
    |||||| ||| || || ||| |||||||||||||||||  || |||||||||||||| ||||| |||||||||| |||||||||| |||| ||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaactgatgaggtgtca 40206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 17700510 - 17700643
Alignment:
Q  19 atttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcac 118  Q
    ||||| ||| ||||||||||||| ||| |||||| ||||||||| |||||  |  || || |||||||||| || ||||||  ||||| ||| | |||||    
T  17700510 attttagagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcac 17700609  T
Q  119 atctgttatcagtttagtccttaccgttaaaaaa 152  Q
     || ||||||| |||||||| |  ||||||||||    
T  17700610 ttccgttatcactttagtccctgacgttaaaaaa 17700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 30270735 - 30270808
Alignment:
Q  125 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||| || ||||||||||| |  | ||||||||  |||||||||||||||| |||||||||| |||||    
T  30270735 tatcagtttaatctttaccgttaaacacttctgttaactggtgatgtgtcaatcataaggaccaaattaaaagt 30270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 40205950 - 40206023
Alignment:
Q  95 acaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 168  Q
    ||||| |||||  ||||||||||| || ||||||||||||||| ||  |||||||||| |||||||||| ||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 47118177 - 47118112
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggat 89  Q
    |||| |||| |||||||| |||| ||||| ||||||||| |||||| | |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggat 47118112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 48572978 - 48573119
Alignment:
Q  20 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 119  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| | |||  |  ||||| |||||||||| || ||||||  || |  ||| | |||||     
T  48572978 ttttttagcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcact 48573077  T
Q  120 tctgttatcagtttagtccttaccgttaaaaaactatgttaa 161  Q
    || ||||||| ||||||||||  |||||||||| | ||||||    
T  48573078 tccgttatcactttagtccttgacgttaaaaaaatttgttaa 48573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 17702045 - 17701917
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||||||||||||||||| |||  ||| | |||| ||||||||||| |  ||||| |||||| ||| || ||||||  ||||| ||| | ||||| || |    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  124 ttatcagtttagtccttaccgttaaaaaa 152  Q
    |||||| |||||||| |  ||||||||||    
T  17701945 ttatcactttagtccctgacgttaaaaaa 17701917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||  |   |||| |||||||||| || ||||||  ||||| ||| | ||||| ||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatg 170  Q
     ||| | |||||||| |  |||||||||| | |||||| | ||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 40317838 - 40317874
Alignment:
Q  95 acaaaatagtccttgaatgtgcacatctgttatcagt 131  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40317838 acaaagtagtccttgaatgtgcacttctgttatcagt 40317874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 8484331 - 8484158
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||| | |||| ||||||| | ||||||||| |||||||||| |||||||| | || |||    
T  8484331 gagtaaatagtcactttggtctctgattttgcacctcgttgtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgt 8484232  T
Q  125 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    |||||||||||| |||||||||||||   | |||||||    |||||||||||||||||||| |||||||||||    
T  8484231 tatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 8077731 - 8077545
Alignment:
Q  15 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 114  Q
    |||||||| |||||||||||||| ||||||||   ||||| ||||||| ||||| ||||||| ||||||||||||||| || |||||| |   |||||||    
T  8077731 aataatttatgagtaaatagtcattttggtccccaactttacacctcgttgtcactttagtctccgactcaggataaattataaaataatttctgaatgt 8077632  T
Q  115 gcacatctgttatcagtttagtcctt---accgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 198  Q
    | | |||||||||| |||||||||||   |||||| ||||| |||||||||   ||||||||||||||||| ||||||||| |||||    
T  8077631 gtagatctgttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 8075482 - 8075601
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 122  Q
    |||||||||||||||||| ||||||||||||| ||||  | ||| | ||||||| |||||| | |||||||||||||||| |||||||||||| | ||||    
T  8075482 ttgagtaaatagtcactt-ggtccttgactttacaccatgttgttactttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatct 8075580  T
Q  123 gttatcagtttagtccttacc 143  Q
    |||||||||||||||||||||    
T  8075581 gttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 48646047 - 48646194
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | | ||| || ||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  125 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    ||||| |||||||  |  |||||||||| ||| |||| | ||||||||    
T  48646147 tatcactttagtctctgtcgttaaaaaaatatattaagtgatgatgtg 48646194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 35727693 - 35727843
Alignment:
Q  21 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 120  Q
    ||||||| ||| |||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || || |||  ||||  ||| | |||||||    
T  35727693 ttttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacat 35727792  T
Q  121 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    | ||||||| ||||||||| | ||||||||| || |||||| | ||||||||    
T  35727793 ccgttatcactttagtcctga-cgttaaaaatctctgttaagtgatgatgtg 35727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||| |||||||||||||||||| ||||| | ||||||| |||||  |  |||||  ||||||||| || ||||||  ||||  ||| | ||||| ||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgt 171  Q
    |||||| |||||||| |  |||||||||| | |||||| | |||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 48788793 - 48788754
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtca 48788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 44333141 - 44333282
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 128  Q
    |||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||| ||| || ||||||  ||||  ||| | ||||| || ||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  129 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |   ||||||||  |||||||||| | |||||| | ||||||||    
T  44333241 a--ctagtccttgacgttaaaaaaatctgttaagtgatgatgtg 44333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 384934 - 385001
Alignment:
Q  108 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtca 175  Q
    ||||||||||| || ||| |||||||||||  ||||||||||||| ||||||| || |||| ||||||    
T  384934 tgaatgtgcacttccgttctcagtttagtctctaccgttaaaaaattatgttagctaatgaggtgtca 385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 385739 - 385693
Alignment:
Q  22 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    ||||||||||| ||||||||||||||||||| |||| |||| |||||    
T  385739 tttgagtaaatggtcactttggtccttgactctgcatctcgttgtca 385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 21062813 - 21062859
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcat 69  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  21062813 ttgagaaaatggtcactttagtccctgactttgcacctcgctgtcat 21062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 10899199 - 10899155
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||    
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtca 10899155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 24844627 - 24844683
Alignment:
Q  81 actcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 137  Q
    ||||||||| || |||||| ||||| |||||||||||| ||  ||||||||||||||    
T  24844627 actcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 32766365 - 32766237
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  124 ttatcagtttagtccttaccgttaaaaaa 152  Q
    |||||| ||||||||||  ||||||||||    
T  32766265 ttatcactttagtccttgacgttaaaaaa 32766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 31091648 - 31091505
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 128  Q
    |||||||||||||||||| ||||| ||||||| |||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  129 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    | |||||||  |  |||||||||| |||||||| | ||||||||    
T  31091548 actttagtctctgacgttaaaaaaatatgttaagtgatgatgtg 31091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    ||||||||| ||||||||||||| ||||| ||||  |||| ||||     ||||| || ||| ||| || |||||| |||||| ||||||||||| ||||    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  124 ttatcagtttagtc 137  Q
    ||||||||||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 12746329 - 12746213
Alignment:
Q  22 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatc 121  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||| |    || || |||||||||| || |||||| |||| | ||||||||| | ||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttc 12746230  T
Q  122 tgttatcagtttagtcc 138  Q
     ||||||| ||||||||    
T  12746229 cgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 15442041 - 15441949
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |||||||||| || |||||| |||||||||||||||||| | | |||||| |||||||  ||  |||||| || | |||||||| ||||||||    
T  15442041 gactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaactgatgatgtg 15441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 38853808 - 38853896
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 168  Q
    |||||||||| || |||||| |||||| | ||||||||| || ||||||| |||||||  |  ||||||| || |||||||||||||||    
T  38853808 gactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 5428361 - 5428393
Alignment:
Q  27 gtaaatagtcactttggtccttgactttgcacc 59  Q
    |||||| ||||||||||||||||||||||||||    
T  5428361 gtaaatggtcactttggtccttgactttgcacc 5428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 14705177 - 14705129
Alignment:
Q  20 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    |||| ||| ||||||||||||||||||  |||| |||||||||||||||    
T  14705177 ttttagagcaaatagtcactttggtcccggactctgcacctcgctgtca 14705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 32764935 - 32765082
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    |||||||||||||||||| |||| ||| | |||| || | |||||| |  ||| | |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  124 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |||||| |||| ||| |  |||||||||| |||||||| | ||||||||    
T  32765035 ttatcactttaatccctgacgttaaaaaa-tatgttaagtgatgatgtg 32765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 9538179 - 9538062
Alignment:
Q  20 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 119  Q
    |||| ||| |||||||||||||||||| ||||| |||| |||| |||||| |  ||||| |||||||||| || ||||||  ||||  ||| |||||||     
T  9538179 ttttagagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcact 9538080  T
Q  120 tctgttatcagtttagtc 137  Q
    || ||||||| |||||||    
T  9538079 tccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24900462 - 24900414
Alignment:
Q  20 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  24900462 tttttgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 4592863 - 4593006
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 128  Q
    ||||||||||||| |||| ||| | || | ||||||||||  | |||||| |||||| ||| || ||||||  ||||| ||| | ||||| || ||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  129 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    | |||||||| |  |||||||||| | |||||| | ||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 4593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 8074453 - 8074560
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 128  Q
    ||||||||||||| |||| ||| | |||| ||||||||||  | |||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  129 agtttagt 136  Q
    | ||||||    
T  8074553 actttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 19182952 - 19183095
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 128  Q
    ||||||| ||||| |  |||||||||||||||||||||||  |  ||| | |||||||||| || ||||||  ||| | ||| | | ||| || ||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatc 19183051  T
Q  129 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    | |||||||||| |  |||||||| |||||||| | ||||||||    
T  19183052 actttagtccttgcgattaaaaaaatatgttaagtgatgatgtg 19183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19271416 - 19271483
Alignment:
Q  101 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 168  Q
    |||||||| ||||||||| || |||||||||||||||| |  |||||||||  |||||||||| ||||    
T  19271416 tagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 16978988 - 16979030
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctg 65  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16978988 ttgagtagatagtcactttagtccttgactttgcaccttgctg 16979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  29 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaa 99  Q
    |||||||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 14891270 - 14891225
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 68  Q
    ||||| |||||||||||||||||| | ||| |||||||||||||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtca 14891225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 23772809 - 23772902
Alignment:
Q  26 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 119  Q
    ||||||| ||||||||| ||  ||||||||||||||||| ||||   |||||| ||| || ||| || |||||| |||| | ||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcaca 23772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 26327142 - 26327054
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 168  Q
    |||||||||| || || ||||||  ||||| |||||||| || || |||||||||||||||  |||||||||  | |||||||| ||||    
T  26327142 gactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgttaaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  83 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 168  Q
    ||||||| || ||||||||||||  ||||||||||| || ||||||| ||||||||||  ||||||| || |||||||||| ||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 11060910 - 11060796
Alignment:
Q  24 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 123  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||     ||||  ||||||  || || ||||||||||||| |||||| |||| |  |    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  124 ttatcagtttagtcc 138  Q
    |||||| ||||||||    
T  11060810 ttatcactttagtcc 11060796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 7945681 - 7945532
Alignment:
Q  23 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 122  Q
    ||||| ||||| ||| |||||||| ||||| |||||||||||||||  |  || || |||||||||| || ||||||  ||||  ||| | ||||| ||     
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttcc 7945582  T
Q  123 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    ||||||| |||||||| |  |||||||||| |||| ||| | ||||||||    
T  7945581 gttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgtg 7945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 1001207 - 1001264
Alignment:
Q  80 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 137  Q
    ||||| |||| || |||||| |||||  ||||||||||| ||||||||||||||||||    
T  1001207 gactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 534569 - 534517
Alignment:
Q  120 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 172  Q
    |||||||||| |||||||| ||||||||||||| | |||||| | ||||||||    
T  534569 tctgttatcactttagtccctaccgttaaaaaaatctgttaagttatgatgtg 534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 12676595 - 12676483
Alignment:
Q  25 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 124  Q
    |||||||||||||||||| |   ||||| ||||||||| |||||   | ||| | | |||||||| || |||||| |||||  | ||||||||| | |||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  125 tatcagtttagtc 137  Q
    |||||||||||||    
T  12676495 tatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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