View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8151_low_4 (Length: 278)
Name: NF8151_low_4
Description: NF8151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8151_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 38818571 - 38818384
Alignment:
| Q |
77 |
ataatagtggctcgttcgttcataaatgaactcgaccacttgttagtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaa |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38818571 |
ataatagtggctcgttcgttcataaatgaactcgaccacttgttagtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaa |
38818472 |
T |
|
| Q |
177 |
agtcgactttacaagtgattcaacataccatatctacggatggaaataaaaaaggagaactccgtgcctctttaccatctcattgatg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38818471 |
agtcgactttacaagtgattcaacataccatatctacggatggaaataaaaaaggagaactccgtgcctctttaccatcttattgatg |
38818384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 38818626 - 38818579
Alignment:
| Q |
15 |
cacacacgaccaaggaagaataaaagaa-caagaaaagtcttgcttgc |
61 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
38818626 |
cacacacggccaaggaagaataaaaaaaacaagaaaagtcttgcttgc |
38818579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University