View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8151_low_6 (Length: 259)
Name: NF8151_low_6
Description: NF8151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8151_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27219400 - 27219523
Alignment:
| Q |
1 |
atggactacagacacaatcacacatttaaaagttacacttaatatattaattattaatttgttatagttgtatcagacaatgtaaaactgtttgacgcat |
100 |
Q |
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| T |
27219400 |
atggactacagacacaatcatacatttaaaagttacacttaagatattaattattaatttgttatagttgtatcaggcaatgtaaaactgttttacgcat |
27219499 |
T |
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| Q |
101 |
acattcaaccaaatcataccacaa |
124 |
Q |
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| T |
27219500 |
acattcaaccaaatcataccacaa |
27219523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 27219651 - 27219726
Alignment:
| Q |
167 |
atgctcacgagactatcacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatatt |
242 |
Q |
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| T |
27219651 |
atgctcacgggactaccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatatt |
27219726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27216970 - 27217022
Alignment:
| Q |
72 |
atcagacaatgtaaaactgtttgacgcatacattcaaccaaatcataccacaa |
124 |
Q |
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| T |
27216970 |
atcagacattgtaaaactgttttacgcatacattcaaccaaattataccacaa |
27217022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 27217018 - 27217077
Alignment:
| Q |
183 |
cacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatatt |
242 |
Q |
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| T |
27217018 |
cacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatatt |
27217077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 27219282 - 27219254
Alignment:
| Q |
142 |
catagtcacactctatacaaataccatgc |
170 |
Q |
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| T |
27219282 |
catagtcacactctatacaaataccatgc |
27219254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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