View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8151_low_7 (Length: 233)

Name: NF8151_low_7
Description: NF8151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8151_low_7
NF8151_low_7
[»] chr3 (3 HSPs)
chr3 (3-180)||(43091668-43091852)
chr3 (190-233)||(43091842-43091885)
chr3 (3-79)||(43084155-43084231)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 43091668 - 43091852
Alignment:
Q  3 attgatatagaagttgagtagaagaaaccttaaactttttctggatggtatttgtcatctgaaatcagctgattaagatcttaacaagacataacaaaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43091668 attgatatagaagttgagtagaagaaaccttaaactttttctggatggtatttgtcatctgaaatcagctgattaagatcttaacaagacataacaaaca 43091767  T
Q  103 caagcaattacaacact-------nnnnnnnnncttatcgtccttttcaagtggtcaaaataacataaatatagatttctaaatt 180  Q
    |||||||||| ||||||                |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43091768 caagcaattataacactaaaaaaaaaaaaaaaacttatcgtccttttcaagtggtcaaaataacataaatatacatttctaaatt 43091852  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 43091842 - 43091885
Alignment:
Q  190 atttctaaattatgctcaaatgaaatgaatatatgcatgcaaac 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43091842 atttctaaattatgctcaaatgaaatgaatatatgcatgcaaac 43091885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 43084155 - 43084231
Alignment:
Q  3 attgatatagaagttgagtagaagaaaccttaaactttttctggatggtatttgtcatctgaaatcagctgattaag 79  Q
    |||| |||||||| || ||||||||||||||  |||| |||||||| ||||||||||||||||| | ||| ||||||    
T  43084155 attggtatagaagctgggtagaagaaaccttgtacttcttctggatagtatttgtcatctgaaagcggctaattaag 43084231  T

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