View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8152_low_2 (Length: 351)
Name: NF8152_low_2
Description: NF8152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8152_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 17771756 - 17772098
Alignment:
| Q |
9 |
acatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtgttgaagacggcgacgcggatattagtctacaac |
108 |
Q |
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| T |
17771756 |
acatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtggtgaagacggcgacgcggatattagtcctcaac |
17771855 |
T |
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| Q |
109 |
atcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgacagttttgaaagaaatga |
208 |
Q |
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| T |
17771856 |
atcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgacagttttgaaagaaatga |
17771955 |
T |
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| Q |
209 |
tgaggagttcaagacagctaaggattttcagtgtatacataatccatcctctcaatcttctgttagtagaaaaagcagtccttttacgggggagtcagca |
308 |
Q |
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| T |
17771956 |
tgaggagttcaagacagctaaggattttcagtgtatacataatccatcctctcaatcttctgttagtagaaaaagcagtccttttacgggggagtctaca |
17772055 |
T |
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| Q |
309 |
atttcgaggactaatttgtctgaaatgaacacaccgaatactg |
351 |
Q |
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| T |
17772056 |
atttcaaggactaatttgtctgaaatgaacacaccgaatactg |
17772098 |
T |
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