View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8153_high_2 (Length: 220)
Name: NF8153_high_2
Description: NF8153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8153_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 5230666 - 5230873
Alignment:
| Q |
13 |
atggacatcactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaattcatgctcattcaaatgct |
112 |
Q |
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| T |
5230666 |
atggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaagtcatgctcattcaaatgct |
5230765 |
T |
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| Q |
113 |
accattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatcttacctattctataggtacactgatttcggtggtgctatatctc |
212 |
Q |
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| T |
5230766 |
accattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatgttacctattctgtaggtacactgatttcggtggtgctatatctc |
5230865 |
T |
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| Q |
213 |
atagacca |
220 |
Q |
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|||||||| |
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| T |
5230866 |
atagacca |
5230873 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 17126255 - 17126333
Alignment:
| Q |
13 |
atggacatcactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggta |
91 |
Q |
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||||| || |||||||||| ||| |||||||| |||||| ||||| ||||||||||| || |||||| |||||||||| |
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| T |
17126255 |
atggatattactgtgaaaacttctctcccaacaagaactacaaaccaaaaatgtggacagaaaattggactggctggta |
17126333 |
T |
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