View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8154_high_3 (Length: 209)
Name: NF8154_high_3
Description: NF8154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8154_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 22528750 - 22528924
Alignment:
| Q |
17 |
attctcacatttgtggttcctcttgctctaaggtgtctatccatacaagggttggctaccccataaggtccaacagtgctatcatatcttggtacaacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||| |
|
|
| T |
22528750 |
attctcacatttgtggttcctcttgctctaaggtgtctatccatacaagggttggctaccccataaggcccaacagtggtattatatcttggtacagcaa |
22528849 |
T |
|
| Q |
117 |
tgtggggagcaggagtgattcttagtagtgaatcatggatacagagagtctgacacttgatagaaagttgttaat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
22528850 |
tgtggggagcaggagtgattcttagtagtgaatcatggatacagagagtttgacacttgatagaaagttattaat |
22528924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 31090442 - 31090378
Alignment:
| Q |
127 |
aggagtgattcttagtagtgaatcatggatacagagagtctgacacttgatagaaagttgttaat |
191 |
Q |
| |
|
||||||| |||||||||||| |||| || | || ||||||||||||||| |||||| ||||||| |
|
|
| T |
31090442 |
aggagtggttcttagtagtggatcacagacatagtgagtctgacacttgagagaaagatgttaat |
31090378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University