View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8154_low_1 (Length: 594)
Name: NF8154_low_1
Description: NF8154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8154_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 56492602 - 56492027
Alignment:
| Q |
1 |
tggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatctt |
100 |
Q |
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| T |
56492602 |
tggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatctt |
56492503 |
T |
|
| Q |
101 |
gccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492502 |
gccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaa |
56492403 |
T |
|
| Q |
201 |
ccccacctttcctaatcctcccattactatgactatgatgatcatcatcatcaattcttgaacagtatcttctcactctcattacattacaaggaaacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
56492402 |
ccccacctttcctaatcctcccattactatgactatgatgatgatcatcatcaattcttgaacagtattttctcactctcattacattacaaggaaacac |
56492303 |
T |
|
| Q |
301 |
accaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttcttttcaagttgcaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492302 |
accaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttcttttcaagttgcaact |
56492203 |
T |
|
| Q |
401 |
cctgtcttcagtttagccacgtcactaccctacccaatttcctctctttcaatatcctcttcaaaaacattcacctaaactaatactttctccagtctta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56492202 |
cctgtcttcagtttagccacgtcactaccctacccaatttcctttctttcaatatcctcttcaaaaacattcacctaaactaatactttctccaggctta |
56492103 |
T |
|
| Q |
501 |
aatataaaagacaatcttttatccaattaattttaatatatcaattttgttaactcagttgtctctaatatctaca |
576 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
56492102 |
aatataaaagacaatcttttatccaattaattttaatatatcaattttgttgactcagttgtctctaatatctaca |
56492027 |
T |
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