View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8154_low_3 (Length: 263)
Name: NF8154_low_3
Description: NF8154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8154_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27210569 - 27210813
Alignment:
| Q |
1 |
ctctgagattgagggaaagacagttggtttgcacttctttacgatttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaaag |
100 |
Q |
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| T |
27210569 |
ctctgagattgagggaaagacagttggtttgcatttctttacgacttcatacaaaccatgcgtgctatttaatcaaaagcttaaggaggtttacaacaac |
27210668 |
T |
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| Q |
101 |
ctgaaggaaaatgggcagaactttgagatcgtctttatacccttagatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatcct |
200 |
Q |
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| T |
27210669 |
ctgaaggaaaatggggagaactttgaggtcgtgtttatacccttagatgatgaggaagagtcattcaagaaagaattagaaagcgtgccttggttatcct |
27210768 |
T |
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| Q |
201 |
tgcctctcaaggacaaaacctgtgcgaaactaattcaatactttg |
245 |
Q |
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| T |
27210769 |
tgcctctcaaggacaaaacttgtttgaaactagttaagtactttg |
27210813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27195327 - 27195571
Alignment:
| Q |
1 |
ctctgagattgagggaaagacagttggtttgcacttctttacgatttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaaag |
100 |
Q |
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||||||| ||||||||||||||||||||||||| |||| | ||| |||||||| | ||||||| ||||||| ||||||||| |||||||||||||| ||| |
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| T |
27195327 |
ctctgagcttgagggaaagacagttggtttgcatttctgtgcgacttcatacagagcatgcacgctatttactcaaaagcttaaggaggtttacaagaag |
27195426 |
T |
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| Q |
101 |
ctgaaggaaaatgggcagaactttgagatcgtctttatacccttagatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatcct |
200 |
Q |
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||||||||||||||| ||||||||||| |||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
27195427 |
ctgaaggaaaatggggagaactttgaggtcgtgtttatacctttagatgatgaggaagatgcattcaagaaagaattagaaagtgcgccttggttatcct |
27195526 |
T |
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| Q |
201 |
tgcctctcaaggacaaaacctgtgcgaaactaattcaatactttg |
245 |
Q |
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| T |
27195527 |
tgcctctcaaggacaaaacctgtgcgaaattaattcagtactttg |
27195571 |
T |
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