View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8154_low_4 (Length: 250)
Name: NF8154_low_4
Description: NF8154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8154_low_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3811 - 3571
Alignment:
| Q |
1 |
cttcgtaatagaaggaagtcactgacacacaaaagttttgcaccacgctgcagcacatgacgtctttgtccatagaatcgactgcagttgcatatttcag |
100 |
Q |
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|||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3811 |
cttcctaattgaaggaagtcagtgacacacaaaagtt--gcaccacgctgcagcacatgacgtctttgtccatagaatcgaccgcagttgcatatttcag |
3714 |
T |
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| Q |
101 |
taatacataacatatattaaatgaccttgtttaaataaaaaggttggttcatttagtttcaaagtaaagatcgttaaaaagtgactctaacctctcaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3713 |
taatacataacatatattaaatgaccttgtttaaataaaaaggttggttcatttagtttcaaagtaaagatcgttaaaaagtgactctaacctctcaaga |
3614 |
T |
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| Q |
201 |
accaccatggttgcgatgttttccttcaccaatggaccaccaa |
243 |
Q |
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| T |
3613 |
accaccatggttgcgatgttttccttcaccaatggacccccaa |
3571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36752788 - 36752549
Alignment:
| Q |
1 |
cttcgtaatagaaggaagtcactgacacacaaaagttttgcaccacgctgcagcacatgacgtctttgtccatagaatcgactgcagttgcatatttcag |
100 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
36752788 |
cttcctaatagaagcaagtcactgacacacaaaagttttgcaccacgctgcagcacaggacgtctttgtccatagaatggactgcaattgcatatttcag |
36752689 |
T |
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| Q |
101 |
taatacataacatatattaaatgaccttgtttaaataaaaaggttggttcatttagtttcaaagtaaagatcgttaaaaagtgactctaacctctcaaga |
200 |
Q |
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| T |
36752688 |
aaatacagaacatatattaaatgaccttgtttaaataaaaaggttggttcatttagtttcaaggtaaagatcgttaaaaagtgactctaacctctcaaga |
36752589 |
T |
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| Q |
201 |
accaccatggttgcgatgttttccttcaccaatggaccaccaa |
243 |
Q |
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| T |
36752588 |
---accatggttgcaatgttttccttcaccaatggaccaccaa |
36752549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25283492 - 25283730
Alignment:
| Q |
1 |
cttcgtaatagaaggaagtcactgacacacaaaagttttgcaccacgctgcagcacatgacgtctttgtccatagaatcgactgcagttgcatatttcag |
100 |
Q |
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|||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
25283492 |
cttcctaatacaagcaagtcactgacacgcaaaagttttgcaccacgctgcagcacatgacgtctttgtccttagaatcgactgcaattgcatatttcag |
25283591 |
T |
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| Q |
101 |
taatacataacatatattaaatgaccttgtttaaataaaaaggttggttcatttagtttcaaagtaaagatcgttaaaaagtgactctaacctctcaaga |
200 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25283592 |
taatacataacctatattaaatgaccttgtctaaataaaaaggttggttcatttagtttcaaagt-aagatcgttaaaaagtgactctaacctctcaaga |
25283690 |
T |
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| Q |
201 |
accaccatggttgcgatgttttccttcaccaatggaccaccaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25283691 |
---accatggttgcgatgttttccttcaccaatggaccaccaa |
25283730 |
T |
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